GitHub topics: stochastic-simulations
SciML/FiniteStateProjection.jl
Finite State Projection algorithms for chemical reaction networks
Language: Julia - Size: 464 KB - Last synced at: 1 day ago - Pushed at: 6 months ago - Stars: 20 - Forks: 9
quantumbrake/cayenne
Python package for stochastic simulations
Language: Python - Size: 1.07 MB - Last synced at: about 5 hours ago - Pushed at: about 7 hours ago - Stars: 17 - Forks: 2
Q-bio-Belgrade/TA_I_paper
Code for the paper "Bistability in Type I Toxin-Antitoxin Systems May Lead to Stress-Induced Persister Formation" by Sofija Markovic, Magdalena Djordjevic, Hong-Yu OU, and Marko Djordjevic.
Language: MATLAB - Size: 67.4 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
mauricelanghinrichs/StatsInferenceTutorial
Tutorial for Statistical Inference with Julia.
Language: HTML - Size: 5.87 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
marcoxa/Jillespie
A Julia implementation of Gillespie's algorithm(s).
Language: Julia - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
rouzbeh/Modigliani
Modigliani is a stochastic simulation framework for neuroscientists
Language: C++ - Size: 26.1 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
Gdemaude/ASFVModel
Numba accelerated and multiprocess simulation of propagation of the African Swine Fever Virus
Language: Python - Size: 162 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
WalterNadalin/Reaction-DiffusionProcesses
An implementation of a pratical guide to stochastic simulations of reaction-diffusion processes
Language: Rust - Size: 14.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
mcavallaro/gLoop
Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5
Language: R - Size: 1.31 MB - Last synced at: 5 days ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
lillux/gillespie_ssa
Implementation of Gillespie Stochastic Simulation Algorithm
Language: Jupyter Notebook - Size: 495 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
AdrianGuel/StochasticProcesses
Simulation and kernel density estimation of linear and non-linear stochastic systems. Some codes include the computation of the information rate, KL-divergence and information length.
Language: Jupyter Notebook - Size: 1.02 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
achattaraj/Ksp_phase_separation
Tools for data generation and data analysis for the eLife research article - "The solubility product extends the buffering concept to heterotypic biomolecular condensates"
Language: Python - Size: 787 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0
rafael-a-monteiro-math/Stochastic-Simulations
A glimpse of some stochastic simulation methods. I don't claim originality for the results posted here: these are mostly some quick experiments I did while doing research.
Language: HTML - Size: 11.1 MB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
