Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: structural-variations
walaj/svaba
Structural variation and indel detection by local assembly
Language: C++ - Size: 3.76 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 225 - Forks: 44
starskyzheng/panpop
Application of pan-genome for population
Language: Perl - Size: 62 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 70 - Forks: 7
fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
Language: Python - Size: 12.2 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 511 - Forks: 84
Illumina/manta 📦
Structural variant and indel caller for mapped sequencing data
Language: C++ - Size: 113 MB - Last synced: 17 days ago - Pushed: over 1 year ago - Stars: 388 - Forks: 151
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
Language: C++ - Size: 20.1 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 299 - Forks: 43
micahvista/MAMnet
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
Language: Python - Size: 10.5 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 6 - Forks: 1
pk7zuva/Circle_finder
Micro DNA identification
Language: Shell - Size: 101 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 20 - Forks: 14
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Language: C++ - Size: 35.4 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 277 - Forks: 40
fritzsedlazeck/SURVIVOR_ant
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
Language: HTML - Size: 5.47 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 12 - Forks: 2
vborjesson/SVenX
Pipeline for SV detection using 10X genomics data
Language: Python - Size: 673 KB - Last synced: 10 days ago - Pushed: over 5 years ago - Stars: 2 - Forks: 2
meiers/thesis
PhD thesis
Language: TeX - Size: 46.5 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0
