GitHub topics: two-photon
HelmchenLabSoftware/Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Language: Jupyter Notebook - Size: 462 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 140 - Forks: 39
darikoneil/deinterlacing
Corrects misalignment of forward/backward scanned lines in images collected using resonant-scanning microscopes.
Language: Python - Size: 688 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
PerezOrtegaJ/Xsembles2P
Tool to analyze two-photon calcium imaging videos, extract neuronal activity, and identify neuronal ensembles (ONsembles and OFFsembles).
Language: MATLAB - Size: 6.15 MB - Last synced at: 23 days ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 0
PTRRupprecht/Quantal-analysis-for-spike-inference
Quantal analysis for autocalibration of inferred spike rates from calcium imaging
Language: MATLAB - Size: 563 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
cajal/microns-ta3 Fork of dimitri-yatsenko/microns-ta3
MICrONS TA3 connectivity database
Language: Jupyter Notebook - Size: 222 KB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 2
atakehiro/line-registration
reconstruct the scan image to modify the slipping to horizontal direction
Language: Java - Size: 476 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
drchrisch/SynapseLocator
Perform registration of 3D imaging data and localization of spots (synapses/boutons) in semi-automatic mode (with graphical user interface).
Language: MATLAB - Size: 17.8 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1
cudmore/pie
A Raspberry Pi Controlled Experiment (PiE). See documentation at https://cudmore.github.io/pie-doc
Language: Jupyter Notebook - Size: 17.6 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
cudmore/MapManager-Matlab
Matlab class library to load, analyze, and extend Map Manager analysis.
Language: Matlab - Size: 3.33 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
Animadversio/2p-V1-population-coding-data-analysis
Analyzing 2p in vivo primate V1 population neural response to shapes and natural stimuli
Language: Jupyter Notebook - Size: 5.09 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
