Topic: "crispr-design"
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Language: R - Size: 5.93 MB - Last synced at: 23 days ago - Pushed at: 3 months ago - Stars: 22 - Forks: 6
crisprVerse/crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Language: Python - Size: 80.8 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 20 - Forks: 4
pritykinlab/guidescan-cli
a guideRNA database generation tool
Language: C++ - Size: 9.57 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 15 - Forks: 5
crisprVerse/crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
Language: R - Size: 45.9 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 0
bmds-lab/Crackling
CRISPR, faster, better – The Crackling method for whole-genome target detection
Language: C++ - Size: 282 KB - Last synced at: 27 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 7
crisprVerse/Tutorials
Tutorials for the crisprVerse
Language: TeX - Size: 5.12 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 0
crisprVerse/crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
Language: R - Size: 1.02 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 0
schmidt73/guidescan-web
A guideRNA design tool for the modern era.
Language: Clojure - Size: 2 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2
SubGlitch1/GuideRNA_Designer
CRISPR Guide RNA Designer
Language: Python - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 1
crisprVerse/crisprBase
Base functions and classes for CRISPR gRNA design
Language: R - Size: 3.25 MB - Last synced at: 4 days ago - Pushed at: 10 months ago - Stars: 5 - Forks: 0
crisprVerse/crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
Language: R - Size: 214 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 4 - Forks: 0
MPUSP/snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
Language: R - Size: 769 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 2
crisprVerse/crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
Language: R - Size: 422 KB - Last synced at: 14 days ago - Pushed at: 7 months ago - Stars: 3 - Forks: 0
crisprVerse/crisprShiny
Shiny interface for CRISPR gRNAs designed with the crisprVerse
Language: R - Size: 1.57 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
crisprVerse/crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
Language: R - Size: 105 KB - Last synced at: 26 days ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
pablocarderam/genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
Language: Python - Size: 226 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
milescsmith/Azimuth Fork of jjc2718/Azimuth 📦
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
Language: Python - Size: 6.52 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2
ManuelTgn/CRISPR-HAWK
Variant- and Haplotype-aware CRISPR guide design toolkit
Language: Python - Size: 5.14 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
scbirlab/ogilo
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
Language: Python - Size: 146 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
crisprVerse/crisprScoreData
Pre-trained models for the crisprScore package
Language: R - Size: 5.74 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0