Topic: "plasmodium-falciparum"
bguo068/posseleff_empirical
Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference
Language: Nextflow - Size: 2.15 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
pablocarderam/genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
Language: Python - Size: 226 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
kevin-wamae/PlasmoSeq-DualTech
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
Language: Python - Size: 8.76 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2
ArhamWasti/Plasmodium-Falciparum-Inhibitor-Detection
Utilizing 3D GCN machine learning models to expedite and improve malaria drug discovery through efficient inhibitor detection
Language: Jupyter Notebook - Size: 89.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
nunososorio/Pfalciparum-ReducedACT-Susceptibility
This repository contains data and code for our analysis of the genome of a Plasmodium falciparum strain with reduced susceptibility to Artemisinin-Based Combination Therapy (ACT) drugs. We performed whole-genome sequencing of the HSOG3 clinical isolate and compared it with a large dataset of global P. falciparum samples.
Language: Python - Size: 34.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
colbyford/Ghana_CSP_Haplotypes
PGenetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy - By Dieng and Ford et al.
Language: PostScript - Size: 6.38 GB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Rcoppee/Scan_gene_coverage
Calculating the coverage depth for each coding gene and the percentage of each gene covered at ≥ 10X depth.
Language: Python - Size: 7.83 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
colbyford/pfHRP_MLModel
Modeling Plasmodium falciparum Diagnostic Test Sensitivity using Machine Learning with Histidine-Rich Protein 2 Variants
Language: PostScript - Size: 13.9 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
sjohri20/PlasmodiumSynchronisedCellAtlas
Effect of temperature stress on Plasmodium Falciparum. Code for data analysis. Rshiny app for data exploration.
Language: R - Size: 120 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
