Topic: "network-biology"
aplbrain/grandiso-networkx
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
Language: Python - Size: 175 KB - Last synced at: 14 days ago - Pushed at: 11 months ago - Stars: 62 - Forks: 10
stracquadaniolab/pygna
A Python package for gene network analysis
Language: Python - Size: 3.12 MB - Last synced at: 23 days ago - Pushed at: about 3 years ago - Stars: 32 - Forks: 6
krishnanlab/obnb
A Python toolkit for setting up benchmarking dataset using biomedical networks
Language: Python - Size: 2.66 MB - Last synced at: 10 days ago - Pushed at: about 2 months ago - Stars: 22 - Forks: 1
cytoscape/cytoscape-web
A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.
Language: TypeScript - Size: 11.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 16 - Forks: 9
related-sciences/nxontology-data
NXOntology data: making ontologies accessible as simple JSON files
Language: Jupyter Notebook - Size: 1.96 GB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 4
casanova-lab/NHC
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
Language: Python - Size: 4.98 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 6
lrgr/munk
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
Language: Python - Size: 4.22 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 8 - Forks: 2
enveda/RPath
Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"
Language: Jupyter Notebook - Size: 3.48 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 3
multipaths/DiffuPy
A Python package for network analysis through diffusion label propagation algorithms
Language: Python - Size: 26.8 MB - Last synced at: 29 days ago - Pushed at: about 4 years ago - Stars: 7 - Forks: 2
multipaths/DiffuPath
A Python package for analyzing harmonized biological networks through diffusion algorithms
Language: Python - Size: 27.1 MB - Last synced at: 1 day ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 1
selcenari/ceRNAnetsim
Simulation of interactions miRNA:Competing Targets
Language: R - Size: 28.9 MB - Last synced at: 29 days ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 2
related-sciences/string-protein-network
STRING protein network dataset downloads and transformations
Language: HTML - Size: 11.3 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 2
amberbiology/scribl
Semantic Capture of Relationships In Biological Literature (scribl)
Language: Python - Size: 5.83 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 4 - Forks: 1
Multiomics-Analytics-Group/MicW2Graph
A knowledge graph of the wastewater treatment microbiome and its biological context
Language: HTML - Size: 151 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0
ELIFE-ASU/Neet
Simulating and analyzing dynamical network models
Language: Python - Size: 3.97 MB - Last synced at: 16 days ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 10
Gabrielstav/mastercode
Code for my Master project
Language: Python - Size: 1.55 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
CoXPath/CoXPath
Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"
Language: Jupyter Notebook - Size: 49.2 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 4
Reed-CompBio/protein-weaver
A web interface for ontology-based protein network visualization.
Language: JavaScript - Size: 259 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 2 - Forks: 5
sebwink/deregnet
Find deregulated biomolecular networks
Language: Jupyter Notebook - Size: 220 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 4
AhmedYoussef95/Ecoli-dynamic-interactome
Scoring PPI remodeling from dynamic CF/MS data
Language: R - Size: 1.34 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
montilab/hypeR-next
Network enrichment through random walks
Language: R - Size: 10.1 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 2
saysayani11/EcoNetsAnalysis
centrality measures in ecological networks
Language: Python - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
montilab/shine-nf
A Collection of Nextflow Modules for Bayesian Structure Learning
Language: R - Size: 426 KB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
RamanLab/SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
Language: MATLAB - Size: 13.7 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1
georgosgeorgos/BioInformatics
BioInformatics with Python
Language: Jupyter Notebook - Size: 27.1 MB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0
sreyas-creator/RPAT
Evaluate rocket performance with RPAT. Analyze payload capacity and delta-v trends for LEO, GTO, and TLI missions. 🚀🌌
Size: 1.95 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0
hydraharish123/NetworkAnalyzer
Language: JavaScript - Size: 261 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
GenjiSup/Network-Biology
Parkinson's and drug repurposing analysis using WGCNA and Cytoscape. Data at: https://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS2821
Size: 5.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
saysayani11/miRNA-RAB-network-analysis-in-human-diseases
Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach
Size: 40.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lasseignelab/230227_JW_Setbp1Manuscript
Framework for investigation of cell-type-specific regulation and expression in rare disease
Language: R - Size: 221 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
akialbz/ACS
ACS
Language: Python - Size: 152 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
SuhasSrinivasan/ppi-tf-network
Comprehensive human PPI network and TF network
Size: 1.14 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
montilab/omics-network
An R6 data representation of biological networks and accessory omics data
Language: R - Size: 612 KB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
jananiravi/sigmafactor-network-mtb
2016 Sigma factor network in M. tuberculosis | https://jananiravi.github.io/publication/2016/natcomm/
Language: R - Size: 3.59 MB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
dileep-kishore/epidemic-modeling-using-effective-distances
Epidemic modeling using effective distances
Language: ASP - Size: 103 MB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
alubbock/itmprobe-wrapper
Docker wrapper for ITM Probe information flow tool
Language: Game Maker Language - Size: 156 KB - Last synced at: almost 2 years ago - Pushed at: almost 11 years ago - Stars: 0 - Forks: 0
