openjdk | conda | Package Usage | Ecosyste.ms: Repos

naim-panjwani/LocusFocus

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

11.0.1 environments/environment.yml

Size: 76.7 MB - Last synced: 17 days ago - Pushed: about 1 year ago

imagej/pyimagej-dextr

Where I'm working on integrating pytorch and imagej (via pyimagej). This repo is experimental.

8.* environment.yml

Size: 6.01 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

robert_amezquita/seqsnake

8.0.121 workflows/_yale/filter/pe/environment.yaml
8.0.121 workflows/_yale/filter/se/environment.yaml

Size: 13.3 MB - Last synced: over 1 year ago

steamboat/titan-nf

A Nextflow wrapper around Titan-GC. Documentation available at https://steamboat.gitlab.io/titan-nf/

11.0.9.1.* environment.yml

Last synced: over 1 year ago

capreolus-ir/capreolus

A toolkit for end-to-end neural ad hoc retrieval

>=11,<12 environment.yml

Size: 40 MB - Last synced: 26 days ago - Pushed: about 1 year ago

daler/lcdb-wf

Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

>=8.0.144 wrappers/wrappers/fastqc/environment.yaml

Last synced: over 1 year ago

sbl-sdsc/df-parallel

Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.

11.0.15.* environment.yml

Size: 3.37 MB - Last synced: 10 months ago - Pushed: 10 months ago

leipzig/m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

8.0.192.* meripseqpipe/environment.yml

Size: 182 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

Vision-CAIR/VisualGPT

VisualGPT, CVPR 2022 Proceeding, GPT as a decoder for vision-language models

8.0.152 environment.yml

Size: 6.18 MB - Last synced: 5 days ago - Pushed: about 1 year ago

mr-eyes/denovo-rnaseq

De novo assembly, Differential gene expression, and annotation workflow

11.0.1 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gwcbi/haphpipe

NGS viral assembly and population genetics

8.0.192 environment.yml

Size: 2.35 MB - Last synced: 7 months ago - Pushed: about 3 years ago

HotBloodLee/Graduate

研究生

NLP/pyhanlp-master/environment.yml

Size: 128 MB - Last synced: 9 months ago - Pushed: over 1 year ago

alinegsch/PrBi

8.0.121 environment.yml

Size: 16.2 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

Dartmouth-Data-Analytics-Core/Bioinformatics_workshop_setup

11.0.1 environment.yml

Size: 106 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

Vincent-Ww/Artwork_Interpretation

8.0.152 Projects/environment.yml

Size: 26.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ctr26/nuclear_phenotyping Fork of uhlmanngroup/nuclear_phenotyping

cellprofiler/environment.yaml

Size: 44.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

IDR/idr0094-ellinger-sarscov2

11.* binder/environment.yml

Size: 4.45 MB - Last synced: about 1 month ago - Pushed: 7 months ago

ATpoint/atac_chip_preprocess

Preprocessing workflow for ATAC-seq and ChIP-seq data

11.0.9.1.* environment.yml

Size: 613 KB - Last synced: 10 months ago - Pushed: 10 months ago

yuvipanda/mybinder.org-analytics 📦

Notebooks & code for analyzing mybinder.org statistics

8.0.121.* sparse/repos/pwrose/biojava-notebooks/binder/environment.yml
8.0.121.* sparse/repos/sbl-sdsc/biojava-notebooks/binder/environment.yml

Size: 4.14 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago

sbl-sdsc/neo4j-ipycytoscape

Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension

>=11.0.15 binder_dev/environment.yml
>=11.0.15 environment.yml

Size: 136 KB - Last synced: 8 months ago - Pushed: 8 months ago

scilifelab-lts/b_henriques-normark_1606

11.0.1 bianca-env/environment.yml
11.0.1 envs/environment.yaml

Size: 30.6 MB - Last synced: over 1 year ago

innovationOUtside/tm351vm-binder

See if we can generate a Binder/repo2docker build of the TM351 VM

.binder/environment.yml

Size: 11.5 MB - Last synced: 10 months ago - Pushed: 10 months ago

rwaples/lai-sim

environment.yml

Size: 8.32 MB - Last synced: 2 months ago - Pushed: 4 months ago

BackofenLab/CRISPRtracrRNA

8.0.152 environment.yml

Size: 28.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis

10.0.2 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

VIDA-NYU/domain_discovery_tool 📦

This repository contains the Domain Discovery Tool (DDT) project. DDT is an interactive system that helps users explore and better understand a domain (or topic) as it is represented on the Web.

8.0.152 environment.yml

Size: 18.9 MB - Last synced: 2 months ago - Pushed: over 2 years ago

Pinjontall94/abed

11.0.1 environment.yaml

Last synced: over 1 year ago

NicoKiaru/ABBA-Python 📦

How to use Aligning Big Brains and Atlases with Python

8.* environment.yml

Size: 268 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

NatPombubpa/Qiime2_2022.8_binder

Qiime2_2022.8_binder test

17.0.3.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

kirbyvisp/vdjpuzzle2

VDJPuzzle version 2

8.0.121 environment.yaml

Size: 29.7 MB - Last synced: over 1 year ago

mapcover-ie/mapcover-ie

11.0.8 environment.yaml

Last synced: over 1 year ago

jana_ebler/genotyping-experiments

8.0.192.* env/environment.yml

Size: 22.7 MB - Last synced: over 1 year ago

aryazand/CMV_Promoters_by_host_cell_type

Analyze differential activity of promoters in the cytomegalovirus (CMV) genome during infection of different cell types

17.0.3 env/environment.yml

Size: 55.7 KB - Last synced: 12 months ago - Pushed: about 1 year ago

GenevieveBuckley/pims Fork of soft-matter/pims

Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.

environment.yml

Size: 8.13 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

geneflow/conda/nanopore-amplicon-dereplication

Conda environment for Nanopore Amplicon Dereplication workflow

11.0.1 environment.yml

Last synced: over 1 year ago

geneflow/conda/nanopore_amplicon_dereplicate

11.0.1 environment.yml

Last synced: over 1 year ago

eloyfelix/cdk_fastapi

11.0.9.1.* environment.yaml

Size: 24.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

jorgeltd/ikaros-mutations-id

Pipeline for the identification of two snv of interest in the ikaros gen

8.0.152 environment.yml

Last synced: 12 months ago

treangenlab/variphyer

environment.yml

Last synced: about 1 year ago

smartgamer/chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

8.0.144.* environment.yml

Last synced: over 1 year ago

visanuwan/cresil

CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences

11.0.9.1.* environment.yml

Size: 994 KB - Last synced: 7 months ago - Pushed: 8 months ago

milothepsychic/rnaseq_pipeline

Snakemake RNAseq processing pipeline (STAR or Salmon) via a SLURM cluster

11.0.1 environment.yml

Last synced: over 1 year ago

mfreitas/docker_rnaseq_star

8.0.121 rna_seq_gatk/environment.yml
8.0.121 rna_seq_star/environment.yml

Last synced: over 1 year ago

datapkg/tkpod

Benchmark suite for [tkpod plugins](https://gitlab.com/tkpod).

environment.yaml

Last synced: over 1 year ago

acc-bioinfo/ACC-environment

Conda environment and docker recipe that contains all software and libraries used for the ACC projects.

8.0.121 environment.yml

Last synced: over 1 year ago

likelet/LncPipe

A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets

8.0.144.* environment.yml

Size: 5.78 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

denis.yuen/Sarek

8.0.144.* containers/qctools/environment.yml

Last synced: over 1 year ago

lntran26/analysis2 Fork of popsim-consortium/analysis2

Analysis for the second consortium paper.

environment.yml

Size: 46.5 MB - Last synced: 5 months ago - Pushed: 5 months ago

ChrisJar/dask-sql Fork of dask-contrib/dask-sql

Distributed SQL Engine in Python using Dask

11.0.8 docs/environment.yaml

Size: 3.21 MB - Last synced: 11 months ago - Pushed: 11 months ago

scenerygraphics/sciview

sciview is a tool for visualization and interaction with ND image and mesh data

>=8.0.192,<8.1.0a0 environment.yml

Size: 15.1 MB - Last synced: 4 days ago - Pushed: 5 days ago

sunsetyerin/BIOF501_term_project

repository for UBC BIOF501 term project

envs/environment.yaml

Size: 75 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

nf-core/exoseq 📦

Please consider using/contributing to https://github.com/nf-core/sarek

environment.yml

Size: 2.77 MB - Last synced: 5 months ago - Pushed: over 5 years ago

nf-core/vipr 📦

Assembly and intrahost / low-frequency variant calling for viral samples

8.0.144.* environment.yml

Size: 217 KB - Last synced: 4 months ago - Pushed: over 4 years ago

bshifaw/long-read-pipelines Fork of broadinstitute/long-read-pipelines

Long read production pipelines

8.0.112 docker/lr-pb/environment.yml

Size: 94.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

eudesbarbosa/snappy-pipeline Fork of bihealth/snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

7.* snappy_wrappers/wrappers/rnaqc/environment.yaml
7.* snappy_wrappers/wrappers/rnaqc/rnaseqc/environment.yaml
>=8,<9 snappy_wrappers/wrappers/varfish_annotator/annotate/environment.yaml
>=8,<9 snappy_wrappers/wrappers/varfish_annotator/annotate_sv/environment.yaml
>=8,<9 snappy_wrappers/wrappers/varfish_annotator/bam_qc/environment.yaml
>=8,<9 snappy_wrappers/wrappers/varfish_annotator/environment.yaml

Size: 2.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

XinhaoMei/DCASE2021_task6_v2

Code for CVSSP submission to DCASE 2021 Task 6

8.0.152 environment.yml

Size: 450 MB - Last synced: 10 months ago - Pushed: over 1 year ago

pshevche/drl-frameworks 📦

Comparison of several Deep Reinforcement Learning frameworks.

8.0.144 config/environment.yml

Size: 55.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

pd321/snakemake-wrappers Fork of snakemake/snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

8.* bio/gatk/markduplicatesspark/environment.yaml

Size: 228 MB - Last synced: 7 months ago - Pushed: 11 months ago

musarahm/data_science_and_machine_learning_projects

This repository is a collection of my sample projects related to Data Science and Machine Learning.

8.0.152 environment.yml

Size: 6.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

callumparr/ont_tutorial_cdna_deseq2

bioinformatics tutorial demonstrating a simple workflow for cDNA based differential gene expression using minimap2, Rsubread and DESeq2

environment.yaml

Size: 452 KB - Last synced: 7 months ago - Pushed: over 2 years ago

NayanaBannur/meshed-memory-transformer

8.0.152 environment.yml

Size: 72.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

aimagelab/meshed-memory-transformer

Meshed-Memory Transformer for Image Captioning. CVPR 2020

8.0.152 environment.yml

Size: 7.07 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

blindedjoy/RcTorch

a PyTorch based Reservoir Computing package with Automatic Hyper-Parameter Tuning

11.0.13 environment.yaml

Size: 369 MB - Last synced: 17 days ago - Pushed: over 1 year ago

Shyam-pi/Path-Prediction-of-Pedestrians-using-Bi-Directional-LSTM---A-complete-pipeline

Codes for my Bachelor's thesis with BITS Pilani, Pilani campus in the topic - Path Prediction of Pedestrians using Deep Learning

8.0.152 Keras-LSTM-Trajectory-Prediction/environment.yml

Size: 712 KB - Last synced: 8 months ago - Pushed: 10 months ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench

This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.

11.0.13 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 12 months ago - Pushed: over 1 year ago

jeremy-collins/sd-video-gen

Video generation using Stable Diffusion.

8.0.312 environment.yml

Size: 374 MB - Last synced: about 1 month ago - Pushed: 9 months ago

crim-ca/pavics-jupyter-images

8.0.152 nlp/environment.yml

Size: 52.3 MB - Last synced: 3 months ago - Pushed: 3 months ago

gagneurlab/transmicron

11.0.9.1.* environment.yml

Size: 16.7 MB - Last synced: 18 days ago - Pushed: over 1 year ago

Phlya/snakemake-wrappers Fork of snakemake/snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

8.* bio/gatk/markduplicatesspark/environment.yaml

Size: 229 MB - Last synced: 10 months ago - Pushed: 10 months ago

samwitham/PromoterArchitecture

Arabidopsis thaliana promoter architecture analysis pipeline

11.0.1 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 10 months ago

mtitov/SDK Fork of ExaWorks/SDK

ExaWorks SDK

8.* docker/base/scripts/environment.yml

Size: 385 KB - Last synced: over 1 year ago - Pushed: over 1 year ago

mpievolbio-scicomp/rarefan

>=11.0.8 environment.yml

Size: 36.3 MB - Last synced: 8 months ago - Pushed: 8 months ago

QuickLogic-Corp/symbiflow-arch-defs Fork of antmicro/f4pga-arch-defs

FOSS architecture definitions of FPGA hardware useful for doing PnR device generation.

environment.yml

Size: 12.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

MidsummerNight/symbiflow-arch-defs Fork of f4pga/f4pga-arch-defs

FOSS architecture definitions of FPGA hardware useful for doing PnR device generation.

environment.yml

Size: 8.76 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

charlesbluca/dask-sql Fork of dask-contrib/dask-sql

Distributed SQL Engine in Python using Dask

11.* continuous_integration/gpuci/environment.yaml

Size: 2.84 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

oscarlr/IGenotyper

8.0.152 environment.yml

Size: 10.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

umarcor/f4pga-arch-defs Fork of f4pga/f4pga-arch-defs

FOSS architecture definitions of FPGA hardware useful for doing PnR device generation.

environment.yml

Size: 9.27 MB - Last synced: 13 days ago - Pushed: 13 days ago

kephale/nesoi

A personal napari distribution

11.* environment.yml

Size: 214 KB - Last synced: 4 months ago - Pushed: 4 months ago

anntzer/pims Fork of soft-matter/pims

Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.

environment.yml

Size: 8.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

MolSSI-Education/python-data-science-chemistry

environment.yaml

Size: 23.7 MB - Last synced: 8 months ago - Pushed: about 1 year ago

christophfink/r5py Fork of r5py/r5py

A Python wrapper for the R5 routing analysis engine (https://github.com/conveyal/r5). Inspired by r5r, a wrapper for R (https://ipeagit.github.io/r5r/)