GitHub topics: biocuration
biopragmatics/bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Language: Python - Size: 1.11 GB - Last synced at: about 8 hours ago - Pushed at: about 9 hours ago - Stars: 128 - Forks: 55
OBOFoundry/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Language: Python - Size: 50 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 176 - Forks: 208
griffithlab/civic-v2
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
Language: TypeScript - Size: 85.9 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 21 - Forks: 5
cthoyt/cthoyt.github.io
My personal website, served at https://cthoyt.com
Language: HTML - Size: 40.7 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 4
monarch-initiative/curategpt
LLM-driven curation assist tool
Language: Jupyter Notebook - Size: 11.9 MB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 83 - Forks: 13
biopragmatics/biomappings
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
Language: Jupyter Notebook - Size: 85.1 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 52 - Forks: 14
biopragmatics/obo-db-ingest
🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
Language: Python - Size: 9.25 GB - Last synced at: 14 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1
monarch-initiative/HpoCaseAnnotator
Next-generation Biocuration App for annotating cases and PhenoPackets
Language: Java - Size: 12.1 MB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 1
pombase/curation
PomBase curation
Size: 1.28 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 0
lmichan/PFR
Proyecto de manejo de información digital sobre pruebas de función respiratoria mediante anotación semántica con Hypothes.is
Size: 33.2 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
cthoyt/doctoral-thesis
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
Language: TeX - Size: 68.6 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 29 - Forks: 2
GMOD/docker-apollo Fork of hdzierz/docker-webapollo2 📦
:whale: Apollo 2.X Docker Image
Language: Shell - Size: 320 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 10 - Forks: 12
jakelever/pgxmine
Text mining for pharmacogenomic associations for PharmGKB
Language: TeX - Size: 1.11 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 5
BioComputingUP/apicuron-issue-tracker
This repository is dedicated to issue tracking for APICURON, a recognition tool for scientific databases
Size: 1.95 KB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pharmacome/curation
Guidelines and procedures for curation (manual and semi-automated)
Language: Python - Size: 85 KB - Last synced at: 9 months ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 2
pharmacome/conso
The Curation of Neurodegeneration Supporting Ontology (CONSO)
Language: Jupyter Notebook - Size: 36.2 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 6 - Forks: 5
pharmacome/conib
Curation of Neurodegeneration in Biological Expression Language (CONIB)
Language: Jupyter Notebook - Size: 38.2 MB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 7
bel-enrichment/bel-enrichment
A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL
Language: Python - Size: 92.8 KB - Last synced at: 3 days ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 0
CoronaWhy/bel4corona
Code, notebooks, and resources for exploring and analyzing mechanistic knowledge graphs about 'rona
Language: Jupyter Notebook - Size: 37.9 MB - Last synced at: 9 months ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 1
bel-curation/pybel-git
Git and continuous integration tools for PyBEL to assist in curating BEL
Language: Python - Size: 29.3 KB - Last synced at: 26 days ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1
pharmacome/semi-automated-curation
Results from semi-automated curation with INDRA/PyBEL
Language: Python - Size: 12 MB - Last synced at: 9 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
neurommsig/neurommsig-terminology
Terminologies used in NeuroMMSig and AETIONOMY
Size: 107 KB - Last synced at: 9 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
