GitHub topics: brain-atlas
tsbinns/mni_to_atlas
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
Language: Python - Size: 742 KB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 0
dfsp-spirit/freesurferformats
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
Language: R - Size: 7.47 MB - Last synced at: 15 days ago - Pushed at: 7 months ago - Stars: 23 - Forks: 4
BlueBrain/Atlas-Download-Tools
Search, download, and prepare brain atlas data.
Language: Python - Size: 544 KB - Last synced at: 25 days ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 8
blixilla/LocareJSON
LocareJSON is a collection of JSON schemas for defining geometrical shapes with coordinates in 3D brain atlas coordinate spaces.
Language: Python - Size: 20.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1
YasPHP/BrainAR
A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.
Language: Python - Size: 3.86 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 12 - Forks: 1
manasikattel/misa
Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet
Language: Python - Size: 113 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 2
cau-riken/zaviewer
a web-based 2D high-resolution brain image viewer
Language: JavaScript - Size: 29.1 MB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
Parietal-INRIA/DiFuMo
Dictionary of Functional Modes for brain imaging
Language: HTML - Size: 1.99 GB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 22 - Forks: 5
sheelabhadra/Brain-Atlas-Project
Code repository for automatic retrieval and registration of rodent brain atlases
Language: Jupyter Notebook - Size: 115 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 3
shiveshc/CRF_Cell_ID
Automatic annotation of cell identities in dense cellular images.
Language: MATLAB - Size: 1.28 GB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 2
BlueBrain/nexus-bbp-domains
BBP domains specification (schemas, vocabularies)
Language: Scala - Size: 15.8 MB - Last synced at: 25 days ago - Pushed at: almost 3 years ago - Stars: 9 - Forks: 10
cau-riken/atlas-unity-viewer
Brain/MINDS Marmoset Brain Atlas Viewer made using Unity engine
Language: C# - Size: 83.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
cau-riken/abart
a web-based 3D tool to register brain MRI volumes to the Marmoset Brain Atlas
Language: TypeScript - Size: 12.9 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
MIRTK/BAtCh
Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow
Language: Shell - Size: 168 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
