GitHub topics: core-genome
JJChenCharly/OrthoSLC
OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
Language: Jupyter Notebook - Size: 13 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 6 - Forks: 3
dfornika/core-typer
A Core Genome MLST (cgMLST) Typing Tool
Language: Python - Size: 29.3 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
vinuesa/get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Language: Perl - Size: 115 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 55 - Forks: 9
m-nikolaidis/pyPGCF
python PhyloGenomic, Core and Fingerprint analyses software
Language: Python - Size: 482 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
moorembioinfo/FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
Language: Python - Size: 49.8 KB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
chadlaing/Panseq
Pan-genomic sequence analysis
Language: HTML - Size: 16.6 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 43 - Forks: 14
gmagannaDevelop/Genomique-Comparee
Génomique Comparée (Cours M2 AMI2B Paris-Saclay)
Language: Python - Size: 499 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
