Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: core-genome
m-nikolaidis/pyPGCF
python PhyloGenomic, Core and Fingerprint analyses software
Language: Python - Size: 482 KB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 0 - Forks: 0
vinuesa/get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Language: Perl - Size: 118 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 46 - Forks: 8
dfornika/core-typer
A Core Genome MLST (cgMLST) Typing Tool
Language: Python - Size: 22.5 KB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 2 - Forks: 0
JJChenCharly/OrthoSLC
OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
Language: Jupyter Notebook - Size: 13 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 1
chadlaing/Panseq
Pan-genomic sequence analysis
Language: HTML - Size: 16.6 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 43 - Forks: 14
moorembioinfo/FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
Language: Python - Size: 49.8 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0
gmagannaDevelop/Genomique-Comparee
Génomique Comparée (Cours M2 AMI2B Paris-Saclay)
Language: Python - Size: 499 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
