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GitHub topics: force-fields

openforcefield/openff-toolkit

The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io

Language: Python - Size: 218 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 344 - Forks: 99

apax-hub/apax

A flexible and performant framework for training machine learning potentials.

Language: Python - Size: 5.85 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 20 - Forks: 3

AspirinCode/awesome-AI4MolConformation-MD

List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning

Size: 5.62 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 218 - Forks: 20

TinkerTools/tinker

Tinker: Software Tools for Molecular Design

Language: Fortran - Size: 125 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 142 - Forks: 70

TinkerTools/tinker-gpu

Tinker-GPU: Next Generation of Tinker with GPU Support

Language: C++ - Size: 38.4 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 51 - Forks: 29

ACEsuit/mace-foundations

MACE foundation models (MP, OMAT, Matpes)

Language: Shell - Size: 44.9 KB - Last synced at: 6 days ago - Pushed at: 16 days ago - Stars: 123 - Forks: 10

mir-group/allegro

Allegro is an open-source code for building highly scalable and accurate equivariant deep learning interatomic potentials

Language: Python - Size: 507 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 403 - Forks: 57

wengroup/camp_run

Cartesian Atomic Moment Potentials -- CAMP

Language: Python - Size: 77.4 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 4 - Forks: 0

wengroup/camp

Cartesian Atomic Moment Potentials -- CAMP

Language: Python - Size: 66.4 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 7 - Forks: 1

mir-group/nequip

NequIP is a code for building E(3)-equivariant interatomic potentials

Language: Python - Size: 4.03 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 742 - Forks: 160

openforcefield/yammbs

Internal tool for benchmarking force fields

Language: Jupyter Notebook - Size: 18.9 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 4 - Forks: 2

openkim/kliff

KIM-based Learning-Integrated Fitting Framework for interatomic potentials.

Language: Python - Size: 6.34 MB - Last synced at: 3 days ago - Pushed at: 26 days ago - Stars: 36 - Forks: 21

CederGroupHub/chgnet

Pretrained universal neural network potential for charge-informed atomistic modeling https://chgnet.lbl.gov

Language: Python - Size: 13.1 MB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 307 - Forks: 79

uf3/uf3

UF3: a python library for generating ultra-fast interatomic potentials

Language: Python - Size: 18.6 MB - Last synced at: 22 days ago - Pushed at: 9 months ago - Stars: 66 - Forks: 26

thorben-frank/mlff

Build neural networks for machine learning force fields with JAX

Language: Python - Size: 14.1 MB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 115 - Forks: 26

atomicarchitects/equiformer

[ICLR 2023 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs

Language: Python - Size: 3.95 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 233 - Forks: 44

rajeshrinet/pystokes

PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

Language: Cython - Size: 54.2 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 47 - Forks: 18

Augus1999/torch_CMRET

Official PyTorch implementation of "Comprehensive Molecular Representation from Equivariant Transformer" paper https://arxiv.org/abs/2308.10752. Made in Cardiff University.

Language: Python - Size: 288 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

ltalirz/atomistic-software

Tracking citations of atomistic simulation engines

Language: JavaScript - Size: 64.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 19 - Forks: 12

lipelopesoliveira/ForceFields

A repository to hold forcefields for molecular mechanics calculations with RASPA

Language: Makefile - Size: 131 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 13 - Forks: 4

atomicarchitects/equiformer_v2

[ICLR 2024] EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations

Language: Python - Size: 7.64 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 254 - Forks: 35

atomicarchitects/DeNS

[TMLR 2024] Generalizing Denoising to Non-Equilibrium Structures Improves Equivariant Force Fields

Language: Python - Size: 11.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 31 - Forks: 2

jewettaij/moltemplate

A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies

Language: Python - Size: 20 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 248 - Forks: 97

ericchansen/q2mm

Quantum to Molecular Mechanics (Q2MM)

Language: Python - Size: 7.19 MB - Last synced at: 3 days ago - Pushed at: over 2 years ago - Stars: 22 - Forks: 29

mvanvleet/p2p-fitting

Fitting codes for obtaining both transferable dispersion coefficients and isotropic dipole polarizabilities. Original author: Jesse G. McDaniel

Language: Fortran - Size: 1.77 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0

MolSSI/mmic_ffpa

Strategy MMIC for force field parameter assignment

Language: Python - Size: 965 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

LarsSchaaf/Guaranteed-Non-Local-Molecular-Dataset

A dataset for benchmarking non-local capabilities of geometric machine learning models.

Size: 823 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

ghutchis/conformer-scoring

Data and scripts relevant to an evaluation of force field methods for conformer scoring

Language: Python - Size: 25.4 MB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 4

jewettaij/emoltemplate

A general cross-platform text-based molecule builder for ESPResSo similar to moltemplate

Size: 2.06 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

ryanmrichard/ForceManII

MM code for QM people

Language: C++ - Size: 15 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 1

GMPavanLab/SwarmCGM

Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (bottom-up) and experimental data (top-down)

Language: Python - Size: 482 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0

davidjtoomer/meta-learn-force-fields

Learning neural network potentials using meta-learning. Final project for Stanford's CS330: Deep Multi-Task and Meta-Learning

Language: Python - Size: 60.5 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

nlesc-nano/MATCH

An unofficial redistribution of the Multipurpose Atom-Typer for CHARMM (MATCH) program

Language: Rich Text Format - Size: 1.48 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Suraj-Yadav/PhysicsEngine2D

A simple implementation of a Physics Engine with collisions and force fields

Language: C++ - Size: 2.26 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

ClaudioZeni/Raffy

Ridge-regression Atomistic Force Fields in PYthon

Language: Python - Size: 60.9 MB - Last synced at: 4 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ricalessandri/PolyP3HT

Polymerize Atomistic P3HT

Language: Shell - Size: 57.6 KB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

juvion/AmberFF_tRNA

Amber force field parameters (based on ff99) for tRNAs

Size: 30.3 KB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1

Related Keywords
force-fields 37 molecular-dynamics 19 machine-learning 14 interatomic-potentials 9 materials-science 7 computational-chemistry 7 graph-neural-networks 6 molecular-mechanics 6 pytorch 5 drug-discovery 5 deep-learning 5 chemistry 5 atomistic-simulations 4 molecular-modeling 4 amber 4 e3nn 3 quantum-chemistry 3 equivariant-graph-neural-network 3 geometric-deep-learning 3 parameterization 2 openmm 2 biomolecular-simulation 2 ai4science 2 transformer 2 equivariant-networks 2 tensor-networks 2 molecule-builder 2 equivariant-neural-networks 2 ai-for-science 2 catalyst-design 2 coarse-grained-molecular-dynamics 2 matrix-functions 1 non-local 1 dataset 1 standards 1 parameterizing-molecules 1 mmschema 1 mmelemental 1 polarization 1 dispersion-model 1 schrodinger 1 quantum 1 optimal-parameters 1 force-field-optimization 1 opls 1 open-science 1 molecule-editor 1 lammps-tool 1 lammps-script-creator 1 lammps-data 1 lammps 1 self-supervised-learning 1 tgui 1 atomistic 1 sfml 1 physics-simulation 1 physics-engine 1 cpp 1 collisions 1 perl 1 partial-charges 1 molecular-graph 1 atom-typing 1 meta-learning 1 optimization 1 lipids 1 coarse-graining 1 polymers 1 quantum-mechanics 1 qm-mm 1 ambermd 1 modified-residues 1 molecular-dynamics-simulation 1 rna 1 espresso 1 pm7 1 molecules 1 dft 1 conformer-scoring 1 charge-distribution 1 materials-modelling 1 kim 1 materials-informatics 1 foundation-models 1 gpu-computing 1 vae 1 proteinconformations 1 ppi 1 neural-network-potentials 1 lstm-neural-networks 1 llm 1 gromacs 1 gnns 1 gan 1 flow 1 enzymes 1 active-learning 1 jax 1 smirnoff-force-field 1 open-force-field-consortium 1