cyverseuk/beast2

Beast 2 agave & docker package

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cyverseuk/blast

blast docker image and cyverse integration

Language: Shell - Size: 22.5 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cyverseuk/bedtools

Language: Shell - Size: 11.7 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 1

UsefulEngines/Portfolio

Reference Info

Size: 1.32 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/sv-gen

Snakemake-based workflow for generating artificial genomes with structural variants

Language: Python - Size: 22.5 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1

lunarc/mbrowser

LMOD Graphical module browser

Language: Python - Size: 53.7 KB - Last synced: 1 day ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

ginolhac/tutorials Fork of ULHPC/tutorials

Tutorials for the usage of the UL HPC platform

Language: HTML - Size: 309 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

RIKEN-LQCD/qws

Lattice quantum chromodynamics simulation library for Fugaku and computers with wide SIMD

Language: C - Size: 370 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 5 - Forks: 5

Foundations-of-HPC/Foundations_of_HPC_2021

This repository collects the materials from the course "Foundations of HPC", 2021, at the Data Science and Scientific Computing Department, University of Trieste

Language: C - Size: 184 MB - Last synced: 8 months ago - Pushed: about 2 years ago - Stars: 21 - Forks: 27

PS-O5/HPC_Applications

These are few HPC implementation codes/snippets which I am sharing with permission to share them. You can use them if you want. :)

Language: C++ - Size: 64.5 KB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

michaelboth/Takyon

Embedded HPC Heterogeneous Communication: Fusing RDMA, Sockets, and More

Language: C - Size: 11.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 4 - Forks: 0

WRF-CMake/wps Fork of wrf-model/WPS

🔨 The WRF Preprocessing System (WPS) with CMake support

Language: Fortran - Size: 2.67 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 11 - Forks: 2

hiejulia/jhipster-distributed-system-computing

Jhipster in distributed computing

Language: Java - Size: 1.52 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

openmole/gama-plugin-old Fork of gnoubi/openMoleGamaPlugin 📦

Plugin Gama for OpenMole application

Language: Scala - Size: 202 MB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

hokiegeek2/chapel-code-examples

Language: Chapel - Size: 9.77 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

Lancasterg/HPC-stencil-serial-mpi-openmp

Stencil algorithm improved using mpi and openmp

Language: C - Size: 930 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

michaelboth/EventAnalyzer

Software Event Analyzer: Instrumenting API and Graphical Visualizer

Language: C++ - Size: 40.2 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

minirookie/Preprocess_and_Quantitate_RNA_sequences

Pipelines for whole-cell RNA sequencing data preprocessing, QC, transcriptome mapping and gene expression quantification.

Language: Shell - Size: 95.7 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

albeertito7/High-Performance-Computing

Activities of the subject "High Performance Computing" of the University of Lleida Master's degree in Informatics Engineering

Language: C - Size: 2.22 MB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cstyl/omp-scheduling

Experiments with the loop scheduling options in OpenMP and creation of affinity loop scheduling in C.

Language: Python - Size: 742 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 2

TheJacksonLaboratory/intro-to-hpc

An introduction to HPC

Language: HTML - Size: 2.27 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

SJTU-HPC/hpc-app-container

App Container Collection for SJTU HPC

Language: Dockerfile - Size: 53.7 KB - Last synced: about 2 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 7

SJTU-HPC/container-modules

Container Environment Modules for SJTU PI

Language: Lua - Size: 64.5 KB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 3

wyim-pgl/DCBLAST

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

Language: Perl - Size: 32.3 MB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 13 - Forks: 3

ncar-xdev/repo2apptainer

Repo2apptainer: Wrapper around repo2docker producing Jupyter enabled Apptainer/Singularity images.

Language: Python - Size: 56.6 KB - Last synced: about 8 hours ago - Pushed: about 1 month ago - Stars: 6 - Forks: 0

LeoUribC/Evaluacion2_HPC_LeandroUribe

In this repository will be stored the solution to the problems stated at the HPC's practical exam # 2

Language: C - Size: 21.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ashki23/sbox

Sbox is a toolbox for Slurm that provides information about users activities and facilitate access to the cluster resources.

Language: Python - Size: 1 MB - Last synced: 5 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 1

clowdr/clowdr

Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives

Language: Python - Size: 818 KB - Last synced: 3 days ago - Pushed: almost 4 years ago - Stars: 10 - Forks: 3

HuangCongQing/HPC

高性能计算HPC(High Performance Computing)

Language: C++ - Size: 51.9 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

PSU-ICDS/bulksubmit

Bulk submit jobs on HPC systems using the TorquePBS job scheduler.

Language: Python - Size: 9.77 KB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

VeVeBoi/MergeSortMPI

Making a merge sort algorithm using MPI

Language: Shell - Size: 146 KB - Last synced: almost 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

feelpp/docs.cemosis.fr

Cemosis Docs

Language: JavaScript - Size: 131 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

jose-d/plc-2.0

``plc`` is the public Planck Likelihood Code. It provides C and Fortran libraries that allow users to compute the log likelihoods of the temperature, polarization, and lensing maps. Optionally, it also provides a python version of this library, as well as tools to modify the predetermined options for some likelihoods (e.g. changing the high-ell and low-ell lmin and lmax values of the temperature).

Language: C - Size: 1.48 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

csc-training/puhti-r-workshop

Workshop on Puhti and R/RStudio access and usage

Language: HTML - Size: 18.3 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

RIKEN-LQCD/jacobi2d

Test program for double buffering communication with utofu for stencil application

Language: C - Size: 69.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

gabyx/HPCJobConfigurator

Python module to generate highly configurable user-defined jobs on a high-performance cluster

Language: Python - Size: 5.57 MB - Last synced: about 2 months ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0

davidgabriel42/thesis-final

Supporting code for my Masters of Science thesis at University of Nevada Reno, in Computer Science

Language: Jupyter Notebook - Size: 323 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

nordine-marie/hpc-dna-approximate-pattern-matching

High Performance Computing : DNA Approximate Pattern Matching (APM)

Language: Jupyter Notebook - Size: 5.58 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

okhoshaba/HPCResearching

HPCResearching - A Software Environment for High-Performance Computing research and development.

Language: Java - Size: 153 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

jose-d/ceico-easyconfigs

Easyconfigs not ready for upstream .. or ugly enough.. :)

Language: Shell - Size: 154 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

datavortex/QuanSimBench

Quantum factorization simulation as a benchmark for HPC

Language: C - Size: 1.67 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

prehensilecode/mpibpc-gromacs-bench-utils

Shell scripts to run and extract output from GROMACS benchmarks.

Language: Shell - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

insigneo-pfire/pFIRE Fork of INSIGNEO/pFIRE

The Parallel Framework for Image Registration

Language: C++ - Size: 31.2 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 1

Exabyte-io/exabyte-benchmarks-suite

Command-line tool for benchmarking HPC hardware performance

Language: Python - Size: 82 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 2

GoHypernet/Galileo-AmberTools-Framework

Repository for AmberTools Mission framework type in Galileo.

Language: Dockerfile - Size: 373 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

LiamBindle/batch_exec

A utility for batch executions with MPI

Language: C - Size: 19.5 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

montsouz/JCL-SSE

A search engine for DNA/RNA/Protein sequences using JCL (JavaCá&Lá)

Language: Java - Size: 33.6 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

neeveresearch/nvx-apps

X Platform Reference Applications

Language: Java - Size: 73.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1

Kamesh-K/High-Performance-Computing

This repository consists of classwork and homework of the course High-Performance Computing offered at IIT Madras.

Language: Jupyter Notebook - Size: 2.94 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

Kamesh-K/Monte-CarloSimulation-For-Options-Pricing

Codes of the HPC Project are added here.

Language: Python - Size: 899 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 2

jayrbolton/hadrosaur

File management for batch compute work

Language: Python - Size: 56.6 KB - Last synced: 20 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

unstabl3/dextros

A command line password cracking tool which works on a cluster(HPC).

Language: Python - Size: 21.5 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

jwcrandall/arkouda-DevOps

Language: Jupyter Notebook - Size: 6.8 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

nompelis/INMPI

A library of MPI utility functions. (Nothing yet to see here.)

Language: C - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 1 - Forks: 0

howlettjames/Advanced-Computing-Systems-Programming

This repository contains practices and projects related to the subject Advanced Computing Systems Programming at ESCOM - IPN.

Language: C - Size: 14.3 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

cyverseuk/Documentation

Wiki of CyVerseUK project. Tutorials and overview of technologies.

Size: 384 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

CBDatCMU/slurm-examples

Just sample scripts that show you how to use SLURM

Language: Shell - Size: 1000 Bytes - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

jose-d/ceico-easybuilder

Wrapper for Easybuild building list of software in container

Language: Shell - Size: 35.2 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

sgrieve/concavity

Workflow to process SRTM data into chunks for LSDTopoTools

Language: C++ - Size: 3.65 MB - Last synced: 3 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 3

bonartm/cheopsr

R package for talking to the HPC cluster at the University of Cologne

Language: R - Size: 44.9 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

saschagottfried/fds Fork of firemodels/fds

Fire Dynamics Simulator

Language: Fortran - Size: 175 MB - Last synced: 11 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

mohamso/optewe

A repository that contains the source code for a seismic wave simulator, autotuning scripts, and a corresponding post-processing tool for finding better system configurations

Language: C++ - Size: 45 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 2

cyverseuk/kallisto

Language: Shell - Size: 16.6 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

ravenschade/chpclog

Language: C - Size: 55.7 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

xiamr/pbs

Cluster task management system for HPC

Language: Python - Size: 21.5 KB - Last synced: 11 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

thempatel/functional_genomics_tools

Functional genomics tools

Language: Python - Size: 376 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

cyverseuk/mikado

Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies

Language: Shell - Size: 30.3 KB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

TRex22/dave-A-2048-AI

dave A 2048 AI to work on a high performance computing cluster using CUDA and MPI

Language: C - Size: 9.07 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/polymarker

Dockerized Agave app for Polymarker, a SNP assay development pipeline

Language: Shell - Size: 13.7 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cyverseuk/mrbayes

MrBayes app w/docker & mpi

Language: Shell - Size: 11.7 KB - Last synced: 8 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

cyverseuk/btrim

Language: Shell - Size: 6.84 KB - Last synced: 8 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

robertBrnnn/dgrid

Docker task execution for existing schedulers/resource managers. Allowing users to run multiple images/containers in parallel as a task submitted to their cluster

Language: Python - Size: 169 KB - Last synced: over 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0