GitHub topics: stochastic-reaction-networks
voduchuy/NumCME.jl
Direct solution of the Chemical Master Equation in Julia.
Language: Julia - Size: 594 KB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 2
voduchuy/Vo_2019_ADAMHFSP Fork of MunskyGroup/Vo_2019_ADAMHFSP
Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.
Language: MATLAB - Size: 36.1 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
voduchuy/KrylovFspSsa
Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
Language: Fortran - Size: 71.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
voduchuy/Kalb_Vo_2021 Fork of MunskyGroup/Kalb_Vo_2021
This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.
Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
voduchuy/CudaFsp
CUDA-based implementation of the Finite State Projection (FSP) algorithm.
Language: Cuda - Size: 90.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
voduchuy/StMcmcCme
This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."
Language: Jupyter Notebook - Size: 124 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
voduchuy/pypacmensl
Python wrapper for PACMENSL.
Language: Cython - Size: 119 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
voduchuy/pacmensl
Library for parallel direct solution of the Chemical Master Equation (CME).
Language: C++ - Size: 925 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0