GitHub topics: structure-variation
orangeSi/GSSplayground 📦
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Language: HTML - Size: 148 MB - Last synced at: 11 months ago - Pushed at: almost 5 years ago - Stars: 31 - Forks: 7
Shuhua-Group/SVanalysis_STARProtocols
A protocol for applying low-coverage whole-genome sequencing data in structure variation studies
Language: Shell - Size: 21.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
Archieyoung/SVAN
A Structure Variantion Annotation Tool
Language: Python - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0
geniusphil/run-annotsv
Annotation structure variant
Language: Shell - Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
orangeSi/Grainbow
show the genome structure variation or assembly error by pair-end or mate-pair reads
Language: Perl - Size: 6.1 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0