GitHub topics: transcription-factor
Jumitti/TFinder
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Language: Python - Size: 60.7 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 16 - Forks: 17
saezlab/dorothea
R package to access DoRothEA's regulons
Language: R - Size: 393 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 143 - Forks: 26
Secret-Ambush/Identifying-Anchor-Residues-in-TFBS
Anchor Residue Identification for any TF
Language: HTML - Size: 85.8 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 1
draeger-lab/TFpredict
Identification and structural characterization of transcription factors based on supervised machine learning
Language: Java - Size: 133 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 7 - Forks: 3
microsoft/BindVAE
Variational Auto Encoders for learning binding signatures of transcription factors
Language: Python - Size: 9.41 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 12 - Forks: 3
ashleymaeconard/TIMEOR
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
Language: R - Size: 404 MB - Last synced at: 10 months ago - Pushed at: about 3 years ago - Stars: 17 - Forks: 4
NctuICLab/PredCRP
Predicting the regulatory role of CRP transcription factor in Escherichia coli
Language: C++ - Size: 222 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1
hniszlab/hoxd13
R/bash/perl code for analysis and visualization
Language: R - Size: 1.35 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1
jlduan/Reprogram-Seq
Reprogram-Seq: Rational reprogramming of cellular states by combinatorial perturbation
Language: HTML - Size: 391 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1
