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GitHub topics: variant-calls

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

Language: HTML - Size: 623 MB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 181 - Forks: 46

A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.

Language: Python - Size: 93.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 78 - Forks: 18

🔧 Simple script in python to convert CSV files to VCF

Language: Python - Size: 810 KB - Last synced: 27 days ago - Pushed: about 2 months ago - Stars: 70 - Forks: 23

PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)

Language: C++ - Size: 1.28 MB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 13 - Forks: 0

Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure

Language: Shell - Size: 134 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 51 - Forks: 16

:snake: DRAGEN Tumor/Normal workflow post-processing

Language: Python - Size: 138 MB - Last synced: 20 days ago - Pushed: 8 months ago - Stars: 19 - Forks: 8

An implementation of a generic ArrayList and a generic LinkedList in cpp which can store multiple data type variables.

Language: C++ - Size: 1.03 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 6 - Forks: 0

Intersect multiple VCF files with haplotype awareness

Language: Python - Size: 518 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 21 - Forks: 2

From second generation sequencing reads to variant calls

Language: Makefile - Size: 23.4 KB - Last synced: 7 months ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0

COVID-19 Variants Repository

Size: 6.64 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 1

Language: Java - Size: 703 KB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

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