Topic: "snakemake-workflow"
lightning-auriga/statgen-mi
multiple imputation for association studies
Language: Python - Size: 10.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
JuanCarlosBio/RNA-Seq_VIU
Actividades de la asignatura de Análisis de transcriptómicos de la expresión génica
Language: Python - Size: 35.8 MB - Last synced at: 12 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
SammedMandape/NIST
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
Language: R - Size: 72.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
person-c/bulkRNAseq_snakemake
Snakemake workflow for bulkRNAseq
Size: 26.4 KB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
massiddamt/rna_vc_docker
A Snakemake pipeline for RNA Seq Variant Calling
Language: Python - Size: 14.6 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 2
pd321/create-reference-indices
A snakemake workflow to create reference indices and other supplementary files for analysis
Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
fatmakahveci/milestone
bacterial strain identification
Language: Python - Size: 8.78 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
mrmrwinter/isoseq_processing
A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences
Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
fpozoc/appris_rnaseq
Snakemake pipeline to perform a high-performance batch RNA-seq quantification
Language: Python - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
areebapatel/Rapid-CNS2 📦
Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
Language: Shell - Size: 572 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
ccaudek/snakemake_playground
Snakemake tutorial
Language: HTML - Size: 3.01 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
rstats-tartu/simulate-rnaseq
Workflow to simulate an RNA-seq reads and perform DE-analysis
Language: Python - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
laelbarlow/jackhmmerer
A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.
Language: Python - Size: 235 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
lachlandeer/xaringan-snakemake
build xaringan slides with snakemake
Language: R - Size: 22.5 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
llFREEDll/Snake-Game
A snake game build on javaScript, just eat the food!!
Language: JavaScript - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
gustaveroussy/rna-count-salmon
Count your fastq-formatted rna-seq reads with Salmon
Language: Python - Size: 335 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1
cnuahs/snakemake-minimal
A minimal Snakemake pipeline.
Language: Python - Size: 1000 Bytes - Last synced at: 4 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
vallenderlab/rnaseq-tuxedo-suite
An RNASeq snakemake workflow using the Tuxedo suite.
Language: Python - Size: 14.6 KB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
LUMC/gnomad-merge
Snakemake pipeline to merge gnomAD VCF files
Language: Python - Size: 59.6 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
vallenderlab/cookiecutter-snakemake-workflow
A cookiecutter for snakemake workflows.
Language: Python - Size: 21.5 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0