nf-core/funcscan

(Meta-)genome screening for functional and natural product gene sequences

Language: Nextflow - Size: 12.9 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 56 - Forks: 17

BioGenies/peptide-prediction-list

Collects software dedicated to predicting specific properties of peptides

Language: Shell - Size: 17.5 MB - Last synced: 1 day ago - Pushed: over 1 year ago - Stars: 42 - Forks: 8

LinTzuTang/AI4AMP_predictor

Language: Jupyter Notebook - Size: 846 KB - Last synced: 9 days ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

AaronFeller/Cinful_v2

HMMER-based microcin search using full microcin sequences and double-glycine signal region.

Language: Jupyter Notebook - Size: 25.7 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

szczurek-lab/hydramp

HydrAMP: a deep generative model for antimicrobial peptide discovery

Language: Jupyter Notebook - Size: 1.42 MB - Last synced: 30 days ago - Pushed: over 1 year ago - Stars: 27 - Forks: 8

Darcy220606/AMPcombi

AMPcombi parses and filters results from AMP prediction tools

Language: Python - Size: 118 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 4 - Forks: 1

fantin-mesny/amapec

Antimicrobial activity prediction for fungal effector candidates

Language: Python - Size: 19.2 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

Trailblazer29/AMP-Activity-Prediction

Predict the activity of antimicrobial peptides

Language: Jupyter Notebook - Size: 179 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

auyer/IFB_ampmDb_POC

Antimicrobial Peptide web Database built with Django. Decreasing research costs to new antibiotics.

Language: Python - Size: 2.83 MB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 2

SysBioUAB/PyAMPA

PyAMPA: The new version of the AMPA software

Language: Python - Size: 9.3 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

BioGenies/NegativeDatasets

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.

Language: HTML - Size: 64.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Grupo-Medicina-Molecular-y-Traslacional/StarPep

StarPep toolbox: a software for studying the antimicrobial chemical space with newtork science tools and similarity searching models

Language: Java - Size: 618 MB - Last synced: 11 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

sayalaruano/AMPredST

Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides

Language: Python - Size: 27.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 0

plissonf/ML-guided-discovery-and-design-of-non-hemolytic-peptides

Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequences

Language: Jupyter Notebook - Size: 26.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 9 - Forks: 7

BigDataBiology/AMPSphereWebsite

Website for global antimicrobial peptides.

Size: 23.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 2

mtenrero/AntimicrobialStudyWebApp

WebApp used in antimicrobials resistance study in veterinary medicine in the city of Madrid, ES.

Language: HTML - Size: 519 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

dosorio/undergraduateThesis

Analysis of potential membrane disruption and stability of antimicrobial cationic peptides by molecular dynamics simulations

Language: Shell - Size: 841 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 1 - Forks: 3