Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: cell-types

obophenotype/brain_data_standards_ontologies

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

Language: Python - Size: 274 MB - Last synced: 24 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 3

neurogenomics/MSTExplorer

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.

Language: R - Size: 5.6 MB - Last synced: 22 days ago - Pushed: 26 days ago - Stars: 1 - Forks: 1

kleelab-bch/phet

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

Language: Python - Size: 23 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0

obophenotype/cell-ontology

An ontology of cell types

Language: Makefile - Size: 316 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 130 - Forks: 47

pllittle/CSeQTL

Cell type-specific eQTL mapping

Language: HTML - Size: 702 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1

sarasaezALS/ALS_Pathways

This repository contains the programming codes used in Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types https://advances.sciencemag.org/content/7/3/eabd9036

Size: 91.8 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

cmungall/mianct-schema

Minimal Information About a New Cell Type

Language: Python - Size: 6.06 MB - Last synced: 24 days ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 1

RichKMLS/leukoRight

A web app that uses a custom-built Keras model to recognize and classify white blood cells from microscopic images. It can distinguish between different types of WBCs and identify artifacts and bursted cells. I created this app as a way to explore image recognition technologies and to learn how to develop Keras models from scratch.

Language: Python - Size: 61.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

obophenotype/provisional_cell_ontology

Draft cell type definitions from data - candidates for inclusion in CL

Language: Makefile - Size: 111 MB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 7 - Forks: 1

Helena-Yuhan-Liu/MDGL-main

Multidigraph learning (MDGL) for training recurrent spiking neural networks

Language: Python - Size: 134 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 6 - Forks: 1

JCVenterInstitute/FRmatch

Cell type matching in single-cell RNA-sequencing data using FR-Match

Language: R - Size: 156 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 18 - Forks: 1

JCVenterInstitute/celligrate

Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data

Language: HTML - Size: 26.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

Related Keywords
cell-types 12 machine-learning 3 cell-ontology 3 single-cell 3 obofoundry 3 ontology 3 scrna-seq-analysis 3 transcriptomics 2 genomics 2 anatomy 2 enrichment-analysis 2 anatomy-ontology 2 metadata 2 minimal-information 1 blood-analysis 1 cell-recognition 1 hematology 1 image-classification 1 keras 1 leukocytes 1 lymphocyte 1 marker-genes 1 microscopy 1 microscopy-images 1 monocyte 1 neutrophil 1 data-integration 1 scrna-seq 1 webapp 1 r 1 cell-type-matching 1 white-blood-cells 1 single-cell-analysis 1 single-cell-rna-seq 1 neuromodulation 1 neuromorphic 1 neuroscience 1 spiking-neural-networks 1 brain 1 brain-data 1 neuroanatomy 1 neuron 1 biomedicine 1 genetics 1 human-phenotype-ontology 1 parallel-computing 1 r-package 1 rare-disease 1 microarray-data-analysis 1 patient-subtyping 1 subtype-finding 1 metazoa 1 monarchinitiative 1 owl 1 semantic-web 1 eqtl-mapping 1 gene-expression 1 phased-genotypes 1 rna-seq 1 als 1 polygenic-risk-scores 1 checklist 1 json-schema 1 linkml 1