agrenott/pyhgtmap

Generate OSM contour lines from NASA SRTM (or other digital elevation model sources) data

Language: Python - Size: 21.5 MB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 10 - Forks: 3

JohnLeber/HGT-To-Normal

CUDA code to create normal maps from 1 arc-second resolution HGT/SRTM1 files using the GPU.

Language: Cuda - Size: 10.6 MB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

dem-net/DEM.Net

Digital Elevation model library in C#. 3D terrain models, line/point Elevations, intervisibility reports

Language: C# - Size: 14.4 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 283 - Forks: 55

pguenzi-tiberi/Alien_index_report_generator

Language: Python - Size: 32.2 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

deepomicslab/LocalHGT

Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

Language: Python - Size: 65.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 1

songweizhi/MetaCHIP

Horizontal gene transfer (HGT) identification pipeline

Language: Python - Size: 227 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 51 - Forks: 14

gmalt/hgtparser

a python module to parse HGT file

Language: Python - Size: 28.6 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 17 - Forks: 2

fanglab/BEAST

Bacterial Epigenomics Analysis SuiTe

Language: R - Size: 360 KB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 9 - Forks: 2

ggavelis/HGT_v_Contamination_assessor

How can we discriminate contaminants from HGT? Alien indices are often used to screen out foreign sequences, but can 'overclean' by removing bona fide HGT. This script leverages metadata about each DNA/AA sequence (i.e. whether it is spliced, has a polyA tail or spliced leader), and uses that to assess the extent to which AI-based cleaning is removing legitimate HGT.

Language: Python - Size: 11.7 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

gisleDK/LocalDB_with_gene_synteny

How to make a local NCBI gene database and associated tools for gene synteny analysis

Language: Ruby - Size: 121 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

altingia/mimeo Fork of Adamtaranto/mimeo

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.

Size: 46.9 KB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

FSofTlpz/gdal4hgt

converts geotiffs to hgt and vice versa

Language: C# - Size: 68.4 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 2

Arkadiy-Garber/SprayNPray

Rapid and simple taxonomic profiling of genome and metagenome contigs

Language: Python - Size: 205 MB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 25 - Forks: 4

songweizhi/HgtSIM

A simulator for horizontal gene transfer (HGT) in microbial communities

Language: Python - Size: 1.45 GB - Last synced: 16 days ago - Pushed: over 3 years ago - Stars: 8 - Forks: 1

peterthorpe5/Methods_M.cerasi_R.padi_genome_assembly

Methods for genome paper

Language: Shell - Size: 22.7 MB - Last synced: 11 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 1

garrettsickles/hgt2png

Convert SRTM HGT raster to a subset PNG rasters

Language: C++ - Size: 32.6 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 5 - Forks: 1

petoc/elevation

Simple elevation API reading data from SRTM HGT files.

Language: Go - Size: 5.86 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

jnarayan81/Alienomics

Automated pipeline for HGT and contaminant detection in an assembled, annotated genome

Language: Perl - Size: 13.6 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 5 - Forks: 0

JohnLeber/HGT-Relief-Map

C++ Windows application that creates relief map images from high resolution 1 arc-second HGT/SRTM1 files

Language: C++ - Size: 2.11 MB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

alipirani88/find_hgt_pipeline

compare multiple fasta files using nucmer and extract aligned fragments

Language: Python - Size: 59.6 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

tsl-tuertscher/hgt-elevation

Get elevation from hgt file

Language: TypeScript - Size: 1.91 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

dodie/srtm-map-renderer

Java application to render SRTM data

Language: Java - Size: 604 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 4

gmalt/cli

Download, extract and import HGT data into a SQL database

Language: Python - Size: 29.6 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 4 - Forks: 2

Sxlly/FlightSimulator

Flight Simulator Through Real World Terrain Via NASA Hgt (Height) Files and Matplotlib 3d Plot In Python 3 Using a Kivy GUI

Language: Python - Size: 1.28 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1

JohnLeber/NZDEM-HGT-30

New Zealand digital elevation model in 1 arc-second HGT /SRTM1 format (~30 meter resolution). Computed by interpolating contour lines from the LINZ topographical database.

Size: 648 MB - Last synced: 7 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

petoc/hgt

Go module to read elevation data from SRTM HGT files.

Language: Go - Size: 3.91 KB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

grtlr/srtm

Reads elevation data from .hgt files in Rust.

Language: Rust - Size: 3.91 KB - Last synced: 20 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 5

jnarayan81/autoConTAMPR

autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks

Language: Perl - Size: 1.84 MB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

handaoui-mohamed/Digital-elevation-model

Digital elevation model of Wilaya AIN TEMOUCHENTE Algeria

Language: Python - Size: 21.8 MB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0