GitHub topics: imaging

Repositories

TsekNet/dotfiles

Cross-platform automated system configuration 🛠

Language: PowerShell - Size: 3.5 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 22 - Forks: 5

QI2lab/OPM

Control, reconstruction, and analysis code for oblique plane microscopy.

Language: Python - Size: 4.91 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 22 - Forks: 7

phtnnz/astro

Various tools and data around N.I.N.A automation and the IAS remote telescope

Language: Python - Size: 303 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

davidbhr/CompactionAnalyzer

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

Language: Python - Size: 1.58 GB - Last synced at: 14 days ago - Pushed at: 3 months ago - Stars: 9 - Forks: 1

dumbastro/fits-php

A dumb library to support FITS astronomical images with PHP

Language: PHP - Size: 38.2 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

LLNL/GPP

The Generative Patch Prior for Compressive Image Recovery

Language: Python - Size: 114 MB - Last synced at: 16 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

timing/eise.app

Eise.app

Language: JavaScript - Size: 4.14 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

gianthk/BEATS-CH2024

Synchrotron microCT scans for Cultural Heritage research at SESAME BEATS

Language: Jupyter Notebook - Size: 200 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

qurit/awesome-qurit

A curated list of awesome tools and resources used at Qurit.

Size: 38.1 KB - Last synced at: 6 days ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 0

magamig/hif-benchmarking

🌇🌆 Benchmarking of Hyperspectral Image Fusion methods 🏙🌃

Language: MATLAB - Size: 621 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 42 - Forks: 10

slimgroup/dp4imaging

Code to partially reproduce results in "Deep Bayesian inference for seismic imaging with tasks", Geophysics 2022

Language: Python - Size: 14.6 KB - Last synced at: 16 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 2

waikato-datamining/python-image-complete

Python 3 library for checking whether an image is complete or not (looking for EOF markers or checking file length).

Language: Python - Size: 54.7 KB - Last synced at: 13 days ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

SWC-Advanced-Microscopy/StitchIt

Stitching of large tiled datasets

Language: MATLAB - Size: 1.78 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 18 - Forks: 8

kekyo/SkiaImageView

A control for easy way showing SkiaSharp-based image objects onto WPF/XF/.NET MAUI/Avalonia applications.

Language: C# - Size: 1020 KB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 33 - Forks: 3

InsightSoftwareConsortium/ITKIOOMEZarrNGFF

ITK IO for images stored in OME-Zarr format.

Language: C++ - Size: 151 KB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 10 - Forks: 5

UMapx/UMapx.Imaging.Webp

UMapx sub-library for interacting with webp images

Language: C# - Size: 1.71 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

ImagingLectures/imaginglectures.github.io

Web presentation of imaging lectures

Size: 14.6 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

tomography/holotomocupy

X-ray holo-tomography reconstruction code

Language: Python - Size: 51.6 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 2

anfractuosity/specklepattern

Finding the difference between laser speckle patterns, to detect key presses etc.

Language: Python - Size: 1.95 KB - Last synced at: 19 days ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 0

colour-science/colour-analysis-three.js 📦

Image analysis tools based on Colour and Three.js

Language: JavaScript - Size: 7.08 MB - Last synced at: 1 day ago - Pushed at: 5 months ago - Stars: 20 - Forks: 2

chris1111/Create-macOS-Image-Restore

Deploy image System of macOS

Language: AppleScript - Size: 408 KB - Last synced at: 11 days ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 2

oeminaga/PlexusNet

PlexusNet for medical imaging

Language: Python - Size: 304 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 8 - Forks: 3

MikeHughesKent/PyFibreBundle

Python packaging for image processing of fibre bundle images, including core removal, mosaicing and super-resolution.

Language: Python - Size: 106 MB - Last synced at: 15 days ago - Pushed at: 7 months ago - Stars: 10 - Forks: 2

fastmachinelearning/ml4fg

Machine Learning on frame grabbers for ultra-low latency in situ inference

Language: Jupyter Notebook - Size: 182 MB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 5 - Forks: 4

Kairos-T/Disk-Utils

Script to manage dd disk utilities (imaging, secure erasure and formatting)

Language: Shell - Size: 8.79 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 2

drewnoakes/xmp-core-dotnet

.NET library for working with the Extensible Metadata Platform (XMP)

Language: C# - Size: 1.47 MB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 60 - Forks: 22

scopetools/SIM_recon_python

Place to build a Python version of the SIM reconstruction code.

Language: Python - Size: 68.4 KB - Last synced at: 14 days ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

SESAME-Synchrotron/BEATS_recon

Reconstruction scripts and examples for the BEATS beamline of SESAME

Language: Jupyter Notebook - Size: 81.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 2

Computational-Plant-Science/DIRT

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

Language: Python - Size: 998 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 18

dicomtools/TriDFusion

TriDFusion (3DF) Medical Imaging Viewer

Language: MATLAB - Size: 18.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 18 - Forks: 2

kirbyju/TCIA_Notebooks

Notebooks for working with The Cancer Imaging Archive datasets. Have you written one? Submit a PR!

Language: Jupyter Notebook - Size: 61.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 88 - Forks: 23

ThomasLecocq/msnoise-tomo

The Ambient Noise Tomography Plugin for MSNoise

Language: Python - Size: 1.81 MB - Last synced at: 9 days ago - Pushed at: almost 4 years ago - Stars: 21 - Forks: 16

HuanglabPurdue/NCS

Noise Correction Algorithm for sCMOS cameras

Language: Python - Size: 16 MB - Last synced at: 5 months ago - Pushed at: over 5 years ago - Stars: 29 - Forks: 10

bpops/codedapertures

a python package for generating coded aperture patterns

Language: Python - Size: 12.8 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 12 - Forks: 3

purifetchi/SS1TexConverter

A texture converter for the Serious Sam Classics/Revolution .tex format

Language: C# - Size: 47.9 KB - Last synced at: 1 day ago - Pushed at: almost 4 years ago - Stars: 8 - Forks: 2

AIM-Harvard/SlicerRadiomics

A Slicer extension to provide a GUI around pyradiomics

Language: Python - Size: 955 KB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 105 - Forks: 48

elsamuko/gimp-elsamuko

Some GIMP scripts

Language: Scheme - Size: 16 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 46 - Forks: 13

Mirtia/Computer-Vision

Computer Vision Markdown notes to self study (online courses and code)

Size: 1.06 MB - Last synced at: 9 days ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

zoglauer/gamma-ai

Development of machine-learning-based tools for Compton and pair telescopes

Language: Jupyter Notebook - Size: 385 MB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 12 - Forks: 11

broadinstitute/genepy Fork of jkobject/genepy

Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

Language: Python - Size: 23.9 MB - Last synced at: 3 days ago - Pushed at: almost 2 years ago - Stars: 20 - Forks: 5

sanjayvasanth98/Keyence-VK-X-3000-Imaging-and-Processing-Protocol

This repository provides a comprehensive SOP for using the Keyence VK-X 3000 3D surface profiler for surface imaging and analysis. It covers step-by-step instructions for capturing optical images, performing 3D scans, and processing the results using the VK-X3000 MultiFileAnalyzer software.

Size: 2.58 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

TorchOPC/TorchLitho

Differentiable Computational Lithogrpahy Framework

Language: Python - Size: 5.46 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 156 - Forks: 31

lhqing/merfishing

Code for MERFISH analysis

Language: Jupyter Notebook - Size: 196 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 6 - Forks: 2

attipaci/crush

Data reduction and imaging for select astronomical cameras

Language: Java - Size: 11.6 MB - Last synced at: about 2 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

SuchitReddi/memorywipe

A tool for linux devices to securely wipe their storage and make sensitive data unrecoverable.

Language: Python - Size: 2.82 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 1

pskeshu/brushstrokes

A post-modern microscope software

Language: Python - Size: 4.88 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

InsightSoftwareConsortium/RIREWebsite

Website sources for The Retrospective Image Registration Evaluation Project (RIRE)

Language: HTML - Size: 5.7 MB - Last synced at: 2 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 3

Tom-the-Bomb/imaging-app

An image manipulation app made in rust

Language: Rust - Size: 1.32 MB - Last synced at: 2 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

InsightSoftwareConsortium/ITKArrayFire

ArrayFire-backed ITK pipelines

Language: C++ - Size: 41 KB - Last synced at: 2 days ago - Pushed at: 8 months ago - Stars: 5 - Forks: 5

hotgluebanjo/reuleaux

Color model for film characterization.

Language: C - Size: 72.3 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 42 - Forks: 7

colour-science/colour-analysis 📦

Image analysis tools based on Colour and Vispy

Language: Python - Size: 9.95 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 43 - Forks: 9

DiamondLightSource/python-placental-imaging

Data analysis on segmented placental tissue

Language: Python - Size: 10.7 KB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

uf-focus-lab/.github

Organization Homepage

Size: 17.6 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

sourceduty/3D_Model_Imaging

📷 Visualize 3D model .stl files and save captured images from six distinct views.

Language: Python - Size: 2.06 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

OpenTOPAS/OpenTOPAS

Monte Carlo tool for particle simulation

Language: C++ - Size: 16.3 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 34 - Forks: 12

ssomnath/cantilever_temperature_control

Software for controlling the temperature of a self-heating AFM cantilever

Language: IGOR Pro - Size: 2.89 MB - Last synced at: 2 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 1

EliasFink122/Surface_SAXS

Simulate and analyse surface probe small angle xray scattering experiments.

Language: Python - Size: 27.1 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

hardikkum444/IYD-Image-Your-Disk

IYD is a disk imaging tool like ftk-imager but in python, can be used in cyber-forensics.

Language: Python - Size: 877 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

Erik-White/Mosey

Multiple scanner interval imaging application

Language: C# - Size: 1.42 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 1

jdirani/mne-preprocessing-template

Mne-python source localization template

Language: Python - Size: 44.9 KB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

laurahanu/2D-and-3D-Deep-Autoencoder

Convolutional AutoEncoder application on MRI images

Language: Python - Size: 1.05 MB - Last synced at: 8 months ago - Pushed at: over 7 years ago - Stars: 70 - Forks: 14

galfar/imaginglib

Object Pascal image loading, saving and manipulation library.

Language: Pascal - Size: 15.9 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 132 - Forks: 26

Erik-White/ColonyScanalyser

An image analysis tool for measuring microorganism colony growth

Language: Python - Size: 39.6 MB - Last synced at: 9 days ago - Pushed at: 9 months ago - Stars: 12 - Forks: 3

SierraD/MAXWELL

MAXWELL: A tandem use X-ray/visible light microscopy technique at BL29XU of the RIKEN SPring-8 Center, Japan.

Language: Jupyter Notebook - Size: 3.96 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

hahnec/gulm

Geometric Ultrasound Localization Microscopy (MICCAI 23): Ellipse Intersections from Time-Difference-of-Arrival signals

Language: Python - Size: 4.99 MB - Last synced at: 7 days ago - Pushed at: 9 months ago - Stars: 4 - Forks: 1

vcjdeboer/segment_me_label_free

The goal of segment_me_label_free is to quantitate cell numbers from high-content microscope images using only the image. We implement this for Bright-field label-free images and it does not require a training dataset.

Language: R - Size: 3.66 MB - Last synced at: 5 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

TheMegistone4Ever/Gdanskschool

Analysis of OCV, I-V, P-I curves, and Nyquist plots for SOFC and SOEC modes with SEM imaging.

Language: Python - Size: 1.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

RNA-FRETools/rna-fretools.github.io

Single-moecule imaging and computation with RNA

Size: 5.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1

rrskybox/ImagePlanner

Windows Astro-Imaging Planning Tool utilizing TheSky Pro

Language: C# - Size: 126 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1

tdrose/ionimage_embedding

DL based representation learning of MS imaging data

Language: Python - Size: 6.42 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

eeemoon/piligraphs

A Python Pillow extension for drawing graphs and charts.

Language: Python - Size: 225 KB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

miguelcarcamov/snow

SNOW: caSa pythoN self-calibratiOn frameWork

Language: Python - Size: 1.93 MB - Last synced at: 1 day ago - Pushed at: 7 months ago - Stars: 7 - Forks: 0

RMcDOttawa/MasterBiasMaker

Combines multiple astrophotography Bias frames into a single Master Bias.

Language: C - Size: 129 MB - Last synced at: 10 months ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

rageworx/libsrcnn

Super-Resolution imaging with Convolutional Neural Network library for G++, Non-OpenCV model.

Language: C - Size: 1.29 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 16 - Forks: 1

uob-positron-imaging-centre/pept

Python library unifying Positron Emission Particle Tracking (PEPT) research, including tracking, simulation, data analysis and visualisation tools.

Language: Python - Size: 2.76 MB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 13 - Forks: 8

kxxdhdn/RAPYUTA

Regular AstroPY UTility Assemblage

Language: Python - Size: 61.8 MB - Last synced at: 7 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

bigrobinson/Imaging-System-3D-Noise-

This is a python implementation of the 3D noise model originally used by Center for Night Vision and Electro-Optics to analyze spatio-temporal noise components in imaging systems.

Language: Python - Size: 5.86 KB - Last synced at: 8 months ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 2

nikelui/sfdi

A collection of Python scripts to acquire SFDI data and process it, in order to measure optical properties of tissue.

Language: Python - Size: 36.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0

ecimoli/Functional-Trait-Diversity-FTD-

Language: HTML - Size: 14.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0

analytech-solutions/fkMigration.jl

A Julia project demonstrating the fast f-k migration algorithm.

Language: Julia - Size: 240 KB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 66 - Forks: 6

QI2lab/mcSIM

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

Language: Python - Size: 17.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 46 - Forks: 11

jritch/mri_transcriptomics

Gene set enrichment analysis of the transcriptomic associations of the T1-w/T2-w MRI.

Language: R - Size: 23.1 MB - Last synced at: 11 months ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 2

SWC-Advanced-Microscopy/BakingTray

Serial-section automated anatomy extension for ScanImage

Language: MATLAB - Size: 2.2 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 10 - Forks: 5

rtmigo/stack_blur_dart

Dart library with stack blur algorithm for RGBA images

Language: Dart - Size: 4.52 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

florencejt/fusilli

A Python package housing a collection of deep-learning multi-modal data fusion method pipelines! From data loading, to training, to evaluation - fusilli's got you covered 🌸

Language: Python - Size: 987 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 146 - Forks: 12

mi79012/MS-Thesis-suplimentals-Iradukunda

These are supplemental materials for my MS Thesis in 2024 (Athens, GA)contain Python codes required from RGB image acquisition to analysis and example results(result.csv). In the 'imgs/' folder, you will find example images to perform described tasks.

Language: Python - Size: 63.8 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0