GitHub topics: imaging

Repositories

sstucker/OCTview

Windows desktop application for control of SD-OCT imaging systems

Language: C++ - Size: 40 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 8 - Forks: 2

MikeHughesKent/PyHoloscope

Optimised python package for digital holographic microscopy, both inline and off-axis, with GPU support.

Language: Python - Size: 84 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

jboulanger/twtof

Reader for TwH5 files

Language: Jupyter Notebook - Size: 838 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

lzy886/Nano-device-for-computational-imaging

Review: Nano device, Computational imaging

Size: 1.38 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

TheImagingSource/IC-Imaging-Control-Samples

Windows Sample in C#, C++, Python, LabVIEW and Java

Language: C# - Size: 25.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 88 - Forks: 51

LukasMarckmiller/RemoteForensicAppliance 📦

Bachelorarbeit Informatik 2019 - To be done

Language: Go - Size: 820 KB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

attilasimko/drs

Repository for the thesis 'Contributions to deep learning for imaging in radiotherapy'

Language: Jupyter Notebook - Size: 187 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ohsu-qin/qirest

Quantitative Imaging Profile (QiPr) REST server.

Language: Python - Size: 276 KB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

ohsu-qin/qirest-client

qiprofile REST client

Language: Python - Size: 245 KB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

ohsu-qin/qipipe

OHSU QIN image processing pipeline

Language: Python - Size: 49.7 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

OpenImaging/miqa-phase1

A web application for medical imaging quality assurance

Language: Python - Size: 20.5 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 20 - Forks: 8

Aharoni-Lab/Miniscope-v4

All things Miniscope v4

Language: Prolog - Size: 95.4 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 123 - Forks: 26

HMels/Channel-Registration-SMLM

Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

Language: Python - Size: 28.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

ececcotti/wsclean-pydec

Deconvolution algorithms for the Python support implemented in WSClean, which can now execute a Python script during each major deconvolution iteration.

Language: Python - Size: 61.5 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

dvillacis/BilevelImagingToolbox

Python toolbox for solving imaging continuous optimization problems.

Language: Python - Size: 1.4 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1

paoloinglese/tut_maldiquant_msi

Tutorial preprocessing MSI using MALDIquant

Language: HTML - Size: 2.08 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

paoloinglese/3D_DESI

MATLAB scripts for the paper "Deep learning and 3D-DESI imaging reveal the hidden metabolic heterogeneity of cancer"

Language: Matlab - Size: 28.3 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0

Gopherlinzy/gin-vue3-admin

gin-vue3-admin

Language: Go - Size: 140 MB - Last synced at: 21 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 1

robinschmid/Imajar

Tools for rapid imaging analysis and visualisation of analytical data (mass spectrometry, optical emission spectroscopy, µXRF, ...)

Language: Java - Size: 71.2 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

HussainAther/neuroscience

imaging, spike trains, information theory, neural circuitry, synaptic, channel properties

Language: MATLAB - Size: 52.5 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 9 - Forks: 3

devojyoti96/AIRCARS

AIRCARS is an automated Stokes I calibration and imaging pipeline for spectroscopic snapshot imaging with solar observations made using the Murchison Widefield Array (MWA).

Language: Python - Size: 31.3 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

AFM-SPM/jupyterlite-topostats

Run TopoStats Notebooks directly in your browser.

Language: Jupyter Notebook - Size: 16.7 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

siacavazzi/Cassini-Project

Software pipeline for processing Cassini spacecraft images into wonderful movies.

Language: Python - Size: 9.78 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

commontk/dcmjs

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

Language: CMake - Size: 126 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 108 - Forks: 21

UniPD-DII-ETCOMP/BioMOR

This directory contains a code based on FFT and Model Order Reduction for the parametruc analysis of electromagnetic fields and voxel-based human body interaction

Language: MATLAB - Size: 35.5 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

sarastokes/AOData

Framework for adaptive optics data analysis

Language: MATLAB - Size: 23.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

olivierverdier/odlpet

Bindings for positron emission tomography

Language: Python - Size: 1000 KB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 5

ksjogo/oxrti

Oxford Reflectance Transformation Imaging Toolset

Language: TypeScript - Size: 8.29 MB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 12 - Forks: 1

DSV-CUB/MARISSA

MARISSA - Magnetic Resonance Imaging Software for Standardization

Language: Python - Size: 5.98 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

HelmholtzAI-Consultants-Munich/Automatic-Cell-Counter

A GUI based on napari for counting cells automatically in cell migration experiments

Language: Python - Size: 47.2 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 37 - Forks: 10

vladscript/FinderSpiker

Signal Processing Toolbox for Calcium Imaging Data

Language: MATLAB - Size: 39.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

SINTEF/PySilCam

SINTEF SilCam acquisition, processing and plotting

Language: Jupyter Notebook - Size: 5.66 MB - Last synced at: 23 days ago - Pushed at: 12 months ago - Stars: 8 - Forks: 1

ivyallie/pyflatter

Create color flats for line drawings

Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

thavlik/midas-download-tool

A download automation tool for the (now-retired) MIDAS platform by Kitware (midasplatform.org)

Language: JavaScript - Size: 40 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

LevyDecisionNeuroLab/MDM_Analysis_Scripts

Behavioral and imaing analysis scripts for Medical Decision Making project

Language: MATLAB - Size: 91.8 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

LevyDecisionNeuroLab/VA_PTB_Analysis-Scripts

Behavioral analysis and prt generating scripts for PTSD decision making task

Language: MATLAB - Size: 132 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2

maudy2u/tsx_cmd

meteor-react-mongo javascript server Automating TheSkyX for astrophotography

Language: JavaScript - Size: 29.2 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

bouromain/hippocampy

Toolboox for neurophysiology data analysis (electrophy and calcium imaging)

Language: Python - Size: 5.11 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

MaximLippeveld/single-cell-image-processing

Scalable single cell image processing software built on the SciJava framework. Can be used as ImageJ plugin or standalone CLI.

Language: Java - Size: 232 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

cornish/anonymize-slide-python3

Delete the label image to deidentify a whole-slide image (WSI)

Language: Python - Size: 16.6 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2

arasmssn/flex_geo_RT

Poor man's fast geometric raytrace, relatively straightforward, under-featured stand-in for ZEMAX.

Language: C - Size: 2.47 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

benjaminpope/morphine Fork of mperrin/poppy

poppy derivatives

Language: Jupyter Notebook - Size: 91.1 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 18 - Forks: 3

mooshifrew/Ultrasound-Scanner

Cylindrical Scanning System

Language: Jupyter Notebook - Size: 213 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

spacetx/spacetx-writer

Convert supported filesets to the SpaceTx format

Language: Java - Size: 85.9 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 1

siddharth-maddali/mrbcdi

MR-BCDI: Differentiable multi-reflection Bragg coherent diffraction imaging for lattice distortion fields in crystals

Language: Jupyter Notebook - Size: 11.7 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2

vitessce/vitessce-data

Utils for loading HuBMAP data formats

Language: Python - Size: 3.94 MB - Last synced at: 1 day ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 4

Sarvandani/MUTE_SEGY_CODE

Muting seismic data, data processing, imaging, Full waveform Inversion

Language: MATLAB - Size: 27.9 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

fred9076/OPFA_matlab

A demo of Gotcha Large Scene data orthorectified imaging with DEM via Orthorectified Polar Format Algorithm (OPFA)

Language: MATLAB - Size: 25.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 4

Flohrke/dicom-nifti-pipeline

Language: Python - Size: 12.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

RichardKCollins/Sun-Moon-Gravimeter

Software in support of Gravimeters able to detect the vector tidal acceleration of the sun and moon

Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

faezehrabbani97/Post2p

This is a pipline to analyze the results of Suite2p and facemap

Language: Python - Size: 312 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

hammoudiproject/SuperpixelGridMasks

SuperpixelGridMasks is an approach for sensor-based data augmentation towards image classification tasks and so on.

Size: 14.5 MB - Last synced at: 22 days ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 2

RyanMoffet/RyansSTXMScripts

STXM-NEXAFS data analysis routines written in MATLAB.

Language: Matlab - Size: 2.86 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 2

orc-tuni/dark-spot-mapper

Imaging system for analyzing defects of semiconductor wafers and chips

Language: Python - Size: 573 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 2

novak-jiri/cyclobranch

A tool for mass spectrometry data analysis.

Language: C++ - Size: 5.27 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 3

LlucSF/rCRSI

Visualitzation and processing toolbox for Confocal Raman Spectroscopy Imaging

Language: R - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 3

Elphel/x393

mirror of https://git.elphel.com/Elphel/x393

Language: Verilog - Size: 166 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 33 - Forks: 20

aidanamv/NODDI-pipeline

This project is devoted for applying neurite orientation dispersion and density imaging model of diffusion MRI to mouse brain scans.

Language: C - Size: 292 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

langsamu/VeVa

Language: C# - Size: 17 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

siemens1313/Doppler-imaging

Language: Matlab - Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

matteomaspero/Manual-gold-FM-localisation

Matlab code reproducing the analisys perfomed in Maspero et al (2017), under submission to Radiation Oncology and dedicated to prostate cancer external beam Radiotherapy.

Language: Matlab - Size: 81.1 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 4 - Forks: 1

brjdenis/FlexmapShifter

Simple .NETv4 app that can be used to preview Flexmap calibration files

Language: C# - Size: 76.2 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ameya225/TDI

TDI Capstone Project

Language: R - Size: 31.3 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1

mc2-center/nf-histoqc

A Nextflow wrapper for HistoQC

Language: Nextflow - Size: 1.75 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

gordtulloch/Photometry-Pipeline

Photometry pipeline for an amatuer observatory

Language: Jupyter Notebook - Size: 34.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

SWC-Advanced-Microscopy/ScanImageAPI_Examples

ScanImage API Examples

Language: MATLAB - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

SWC-Advanced-Microscopy/ScanImageTileScan

MATLAB-based ScanImage tile scanner

Language: MATLAB - Size: 306 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

asalmon91/be-octa

Generating an angiogram with the Bioptigen Envisu

Language: MATLAB - Size: 6.42 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 1

tsipkens/aubos

A Matlab codebase implementing axisymmetric unified background-oriented Schlieren (AUBOS), with supporting functions to analyze Abel and the new ARAP transforms.

Language: MATLAB - Size: 5.08 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 1

seanvelasco/lttb

Largest-Triangle-Three-Buckets algorithm for downsampling time-series data while retaining original shape including sharp inflections

Language: TypeScript - Size: 5.2 MB - Last synced at: 18 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

Marcraven/Laue3DND

Data analysis tools for Laue 3-Dimensional Neutron Diffraction

Language: Matlab - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

elsamuko/copymove2

Clone detection app with improved copymove algorithm

Language: C++ - Size: 1.72 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 4

soniaionescu/rapidStacks

Image acquisition routine for the Scanning Lab at the Allen Institute for Brain Science

Language: Python - Size: 229 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 0

DhyanB/Open-Imaging

Tools and libraries that deal with the creation and processing of images.

Language: Java - Size: 28.8 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 104 - Forks: 77

tdrose/deep_mzClustering Fork of DanGuo1223/mzClustering

Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.

Language: Jupyter Notebook - Size: 18.7 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

4QuantOSS/neuroglancer-docker

A docker image for using Neuroglancer

Language: Jupyter Notebook - Size: 8.07 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 3

Team997Coders/BB2018BallFindingVision 📦

Project to demonstrate decoupled, portable, vision processing for 2018 Bunny Bot game.

Language: Java - Size: 489 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 10 - Forks: 10

j1nge/Satellite-Imaging

A program that uses NOAA's datasets to create a satellite image of the Earth's surface.

Language: Jupyter Notebook - Size: 3.67 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

DCC-Lab/HiLoZebrafish

Image acquisition system for volumetric calcium imaging

Language: Python - Size: 1.14 GB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

dzhigaevd/FTvision

For better understanding of far-field diffraction patterns obtained in coherent X-ray diffraction I wrote a simple stand-alone application for laptops with built-in web cams. It allows to see coherent effects from different systems, which can be simply exposed to the web camera being drawn on the paper. There is a number of similar applications published, however in this case the application need no installation or additional modules. Additionally, Gaussian shape field of view is introduced for the input stream in order to satisfy oversampling conditions.

Language: Python - Size: 1000 Bytes - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1

ajinkyakadu/CoShaRP

Convex Shape Recovery Program for Single-Shot X-ray Tomography

Language: MATLAB - Size: 10.1 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

tenss/image-analysis

Examples illustrating basic stages of analyzing calcium imaging data

Language: MATLAB - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

mesoSPIM/mesoSPIMmat

MATLAB tools for handling mesoSPIM data

Language: MATLAB - Size: 40 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

bahanonu/imaging_tools

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

Size: 44.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 22 - Forks: 1

ajinkyakadu/ParametricLevelSet

Geometric Inverse Problem using Parametric Level-Set

Language: MATLAB - Size: 15.2 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 8

jaredlandau/AstroDR8

Script used to calculate and compensate for field rotation in astronomical images and timelapses.

Language: Python - Size: 5.71 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

chepo92/Raspberry-Pi-Camera-App Fork of edgarbc/PiCameraApp

A full graphical interface for the Raspberry Pi PiCamera. Written in Python using Tkinter.

Language: Python - Size: 56.6 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 9 - Forks: 1

KanielDatz/UnnUNet Fork of MIC-DKFZ/nnUNet

This is the regular nnUNet but with three new features: 1 - Training with cyclic learning rate, producing checkpoints from different convergent minima. 2 - an ensemble of the different checkpoints is used to determine uncertainty of each fold. 3 - On inference prediction is made using the lowest uncertainty prediction from 5 folds.

Language: Jupyter Notebook - Size: 12.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0