GitHub topics: non-model-species
connor122721/obtusa
Nextflow pipeline for de novo hifi genome assembly for Daphnia obtusa
Language: Nextflow - Size: 5.86 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
RubenVG02/NonModelGOToolkit
This project features a pipeline for Gene Ontology (GO) enrichment analysis on candidate genes with functional transcriptome annotations. It identifies enriched Biological Processes (BP), Cellular Components (CC), and Molecular Functions (MF), using R and Python to create 2D treemaps and interactive 3D visualizations of GO terms.
Language: Python - Size: 68.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
nat2bee/repetitive_elements_pipeline
Pipeline to identify repetitive elements on non-model species genomes.
Language: R - Size: 4.8 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 4 - Forks: 1
tools4plant-omics/PABLOG
PABLOG: a Primer Analysis tool using a Bee-Like approach on Orthologous Genes
Language: Python - Size: 190 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1
CBFLivUni/mapping_and_enrichment
Collection of code that maps IDs and does enrichment.
Language: R - Size: 138 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
Language: R - Size: 4.56 MB - Last synced at: 4 months ago - Pushed at: about 4 years ago - Stars: 40 - Forks: 9
zd105/AllEnricher
A comprehensive gene set function enrichment tool for multiple species.
Language: Shell - Size: 55 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 12 - Forks: 4
PalMuc/TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Language: Nextflow - Size: 48.6 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 24 - Forks: 14
