GitHub topics: orfs
xryanglab/RiboCode
release version
Language: Python - Size: 301 KB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 51 - Forks: 16
NickJD/StORF-Reporter
Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)
Language: Python - Size: 237 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 1
smithlabcode/ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
Language: Python - Size: 50.1 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 31 - Forks: 8
zhpn1024/ribotish
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Language: Python - Size: 228 KB - Last synced at: 7 months ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 7
mtisza1/Cenote-Taker
DEPRECATED: Use Cenote-Taker 3 instead
Language: Shell - Size: 147 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 2
CalumRaine/orfOS
An assembly language operating system for the Raspberry Pi Zero to identify genes in a DNA sequence.
Language: Assembly - Size: 1.67 MB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0
jcleydsonsilva/VORFome
AI-based Detection of Open Reading Frames (ORFs) in Geminiviruses
Language: Python - Size: 4.99 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
victoria-r/BioPython
A collection of various biopython scripts.
Language: Python - Size: 3.76 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
sestaton/HMMER2GO
Annotate DNA sequences for Gene Ontology terms
Language: Perl - Size: 323 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 39 - Forks: 10
JakobFinci/viral-protein-analyzer
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
Language: Jupyter Notebook - Size: 80.1 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
peter2233finn/ORF-finder-bioinfomatics
This code is not working perfectly as it prints out the incorrect frame numbers. However it is a good starting point for anyone doing a project. Feel free to fork or commit.
Language: Python - Size: 2.93 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
