ylab-hi/ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

Language: Python - Size: 4.26 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 6 - Forks: 1

abrechts/Phoenix-ELN

Electronic lab notebook for organic chemistry

Language: Visual Basic .NET - Size: 852 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 2 - Forks: 0

JoshuaKoopmans/SignalPeptideClassifier

Given files with sequences containing signal peptides and sequences not containing signal peptides, multiple classifiers were tested to see which performs best in the classification of signal peptide sequences.

Language: Python - Size: 1.96 MB - Last synced: 18 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

BigDataBiology/macrel

Predict AMPs in (meta)genomes and peptides

Language: Python - Size: 61.8 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 50 - Forks: 9

lightdock/lightdock-rust

A Rust implementation of the LightDock macromolecular docking software

Language: Rust - Size: 10.5 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 23 - Forks: 5

lsbnb/amp_gan

The GAN model for designing AMP

Language: Python - Size: 9.77 KB - Last synced: 8 days ago - Pushed: over 2 years ago - Stars: 7 - Forks: 1

pgarrett-scripps/ProteinCleaverStreamlitApp

Protein Cleaver is a versatile tool for protein analysis and digestion.

Language: Python - Size: 748 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

chao1224/ChatDrug

LLM for Drug Editing, ICLR 2024

Language: Python - Size: 4.48 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 108 - Forks: 8

lemieux-lab/pepid

Highly customizable research-oriented peptide search engine

Language: Python - Size: 800 KB - Last synced: 12 days ago - Pushed: 7 months ago - Stars: 2 - Forks: 0

mpc-bioinformatics/ProtGraph

ProtGraph - A Graph-Generator for Proteins

Language: Python - Size: 16.6 MB - Last synced: 12 days ago - Pushed: 4 months ago - Stars: 9 - Forks: 5

mindleaving/genome-tools

Tools for exploration and analysis of biochemical data like genomics and proteins

Language: C# - Size: 905 KB - Last synced: 5 months ago - Pushed: 11 months ago - Stars: 4 - Forks: 2

dzjxzyd/pLM4ACE

Language: Jupyter Notebook - Size: 7.18 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

rochoa85/mPARCE

mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets

Language: Roff - Size: 34 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

Wortax/ABM

Peptide Mapping in Genome and peptide Detection in Transcriptomes

Language: C++ - Size: 192 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

ghattab/CMANGOES

A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification

Language: Jupyter Notebook - Size: 37.4 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

AspirinCode/AMPTrans-lstm

Application of deep generative model discovers novel and diverse functional peptides against microbial resistance

Language: Python - Size: 53.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 2

ProteinQure/visualize_HW

Python script to visualize helical wheels based on input sequence.

Language: Python - Size: 283 KB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 6 - Forks: 5

pritindra/PyPep_Toolbox

A set of tools for different calculation of sequences of peptide, dna, rna, etc.

Language: Python - Size: 44.9 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0