Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: phylogenomic
etetoolkit/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Language: Python - Size: 125 MB - Last synced: about 3 hours ago - Pushed: about 6 hours ago - Stars: 765 - Forks: 216
AusARG/pipesnake
ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data.
Language: Nextflow - Size: 16.4 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 5 - Forks: 2
ODiogoSilva/TriFusion
Streamlining phylogenomic data gathering, processing and visualization
Language: Python - Size: 100 MB - Last synced: about 22 hours ago - Pushed: over 5 years ago - Stars: 87 - Forks: 23
V-Z/sondovac
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
Language: TeX - Size: 14.4 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 5 - Forks: 2
tetsufmbio/hypertriplets
A phylogenomics tool that makes a supetree based on triplets analysis. It takes as input several gene trees in Newick format.
Language: Perl - Size: 800 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
