huishenlab/iscream

Make fast and memory efficient BED file queries, summaries, and matrices.

Language: R - Size: 8.76 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 1

RajLabMSSM/echotabix

echoverse module: Tabix indexing and querying.

Language: R - Size: 1.16 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0

tabixio/tabix

Tabix.io UI

Language: TypeScript - Size: 35.5 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 2,212 - Forks: 265

tao-bioinfo/gff3sort

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

Language: Perl - Size: 43.9 KB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 50 - Forks: 19

BioJulia/Indexes.jl

Language: Julia - Size: 246 KB - Last synced at: 13 days ago - Pushed at: 4 months ago - Stars: 3 - Forks: 4

zhanxw/seqminer

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

Language: C - Size: 7.99 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 30 - Forks: 12

bejobioinformatics/tabixpy

Tabix reader written 100% in Python

Language: Python - Size: 44.4 MB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 0

annaeremina96/SQL_DA_karpov_courses

Works completed within the SQL module of the Data Analyst course on the Karpov Courses platform

Language: Jupyter Notebook - Size: 1.44 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

HuntsmanCancerInstitute/GQuery

GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, differentially expressed genes, epigenetic marks, anything that can be associated with genomic coordinates. Just point the GQuery indexer at a collection of tabix indexed files and then run either the GQuery command line app or the web API to search them. GQuery is built using a fast, multi-threaded, genomic range search engine with extensive junit testing.

Language: C - Size: 4.69 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

AntonLavrukhin/SQL_projects

SQL projects

Language: Jupyter Notebook - Size: 224 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

alex-kabin/clickhouse-cluster-docker

Sample Clickhouse cluster deployment with chproxy

Language: Batchfile - Size: 9.77 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

dipdup-io/tabix-docker

Tabix (nginx based) docker image

Language: Dockerfile - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

tabixio/tabix.backend

tabix.io Backend

Language: PHP - Size: 3.23 MB - Last synced at: 4 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 3

schesa/clickhouse-tabix

docker-compose for tabix, clickhouse-server and mariadb

Language: Dockerfile - Size: 13.7 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 3

alexpreynolds/tabix-service

A nodejs-based service for requests for tabix-indexed genomic data

Language: JavaScript - Size: 124 KB - Last synced at: 5 months ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 4