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Topic: "computational-genomics"

mehdiborji/nanoranger

simplified cellranger for long-read data

Language: Python - Size: 50.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 18 - Forks: 5

gurbaaz27/cs690a-clustering-spatial-transcriptomics-data

Course Assignment on Clustering of Spatial Transcriptomics Data

Language: Jupyter Notebook - Size: 62.2 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

klcola/abrowse

The Advanced Genome Browser

Language: JavaScript - Size: 2.48 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 2

Imamachi-n/computational-genomics-with-jupyterlab-r

Computational Genomics with R のサンプル集です

Language: Jupyter Notebook - Size: 348 MB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 2

gawbul/gawbul.github.io

Homepage of Dr Stephen P. Moss, Computational Scientist

Language: HTML - Size: 1.06 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

Unique-Divine/GANs-for-Genomics

Research into the viability of leveraging deep learning to successfully generate synthetic biological samples and identify predictive genetic variants.

Language: Jupyter Notebook - Size: 129 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 1

kelvindecosta/genomic-data-visualization-pipeline

:hospital: This is my attempt at the selection tests for the GSOC 2019 project, "Human history and data visualization" under the Canadian Center for Computational Genomics

Language: Python - Size: 4.85 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

YogiOnBioinformatics/Assorted-Computational-Genomics-Data-Visualizations

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

Language: R - Size: 1.73 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

Kuanhao-Chao/Kuanhao-Chao.github.io Fork of academicpages/academicpages.github.io

Kuan-Hao Chao's Website

Language: HTML - Size: 324 MB - Last synced at: about 14 hours ago - Pushed at: about 14 hours ago - Stars: 0 - Forks: 0

peterajhgraham/BNN_Biological_Network_Inference

This repository contains a Bayesian Neural Network (BNN) based analysis tool for biological network inference that can be used with various datasets. It is programmed in Python along with the torch, torchbnn, pandas, scikit-learn, and matplotlib libraries.

Language: Python - Size: 35.2 KB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

babasaraki/Bioinformatics-wealth-of-African-countries-

Bioinformatics wealth of African countries

Size: 8.79 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

Rafsan7238/COMP90016_Labs

This repo contains my lab and assignment files for COMP90016 course on Computational Genomics at The University of Melbourne written in Python.

Language: HTML - Size: 94.3 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

DamarisDeng/BIM3007-Computational-Genomics

This repo includes assignments of the course Computational genomics and proteomics.

Language: HTML - Size: 60 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

wanying4/Computation-Analysis-of-TCGA-Cancer-Data

This project focuses on analyzing gene expression data from TCGA cancer data to derive associations among genes as well as disease phenotypes, co-expression signatures, and survival analysis.

Language: MATLAB - Size: 472 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

nebojsa55/Computational-Genomics_MidTerm-Project

Project for the course Computational Genomics

Language: Jupyter Notebook - Size: 467 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

aldomann/computational-genomics

Computational Genomics with R

Language: R - Size: 1.95 KB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

YogiOnBioinformatics/ChIP-Seq-Analysis-Nanog-and-H3K27Ac

Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.

Size: 348 KB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

YogiOnBioinformatics/Teaching-Assistant-Computational-Genomics

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Language: Shell - Size: 809 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1

Related Topics
computational-biology 8 bioinformatics 6 genomics 3 r 3 bash 3 spatial-transcriptomics 2 transcriptomics 2 rna-seq 2 gene-expression 2 genome-browser 2 computational-science 2 website 2 deeptools 2 chip-seq 2 genes 2 linux 2 data-visualization 2 computing 1 gawbul 1 visium 1 homepage 1 variational-inference 1 personal-website 1 variational-autoencoders 1 variational-autoencoder 1 louvain-algorithm 1 leiden-algorithm 1 k-means-clustering 1 deep-learning 1 clustering 1 cancer-genomics 1 computational-systems-biology 1 computational-pharmacology 1 computational-neuroscience 1 bayesian-neural-networks 1 jupyterlab 1 sklearn 1 johns-hopkins 1 computer-science 1 algorithm 1 academic 1 vdj-recombination 1 tcr-seq 1 tcr-repertoire 1 slide-seq 1 single-cell-rna-seq 1 sc-rna-seq 1 python3 1 pacbio 1 nanoranger 1 mixcr 1 minimap2 1 cellranger 1 bioinformatics-pipeline 1 10x-genomics 1 science 1 research 1 molecular-evolution 1 medicine 1 hisat2 1 high-performance-computing 1 developmental-biology 1 danio-rerio 1 pytorch-implementation 1 pytorch 1 neural-networks 1 generative-adversarial-network 1 gans 1 columbia-university 1 unix 1 university 1 teaching-assistant 1 motif-finding 1 genome-annotation 1 genome-alignment 1 differential-gene-expression 1 python 1 jupyter-notebook 1 dna 1 umap 1 pca 1 preterm-birth 1 machine-learning 1 volcano-plot 1 university-course 1 ucsc-browser 1 pca-analysis 1 ngs 1 motif-discovery 1 heatmaps 1 data-analysis 1 biplot 1 tcga-data 1 survival-analysis 1 mutual-information 1 matlab 1 concordance-index 1 coexpression 1 cancer 1 visualization 1