earmingol/cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Language: Python - Size: 99.7 MB - Last synced at: 14 days ago - Pushed at: 11 months ago - Stars: 60 - Forks: 17

euxhenh/cellar

Interactive software tool for the assignment of cell types in single-cell studies.

Language: Python - Size: 51.9 MB - Last synced at: 11 months ago - Pushed at: about 2 years ago - Stars: 31 - Forks: 7

mehdiborji/nanoranger

simplified cellranger for long-read data

Language: Python - Size: 50.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 18 - Forks: 5

czbiohub-sf/scRFE

Single-cell identity definition using random forest modelling and recursive feature elimination

Language: Jupyter Notebook - Size: 17.3 MB - Last synced at: 23 days ago - Pushed at: almost 5 years ago - Stars: 12 - Forks: 0

KorkinLab/DUSC

Deep Unsupervised Single-cell Clustering (DUSC) is a hybrid approach for cell type discovery in scRNA-seq data.

Language: Python - Size: 718 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1

NCBI-Codeathons/automated-sc-RNA-seq-analysis-in-the-cloud

Language: Python - Size: 290 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 6

GiatrasKon/Gastric-Cancer-scRNAseq-Analysis

Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

Language: Jupyter Notebook - Size: 19.1 MB - Last synced at: about 2 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

metavannier/scRNAseq_analysis_workflow

Single-Cell RNA-seq analysis workflow for 10x Genomics data

Language: R - Size: 2.16 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

maxozo/yascp Fork of wtsi-hgi/yascp

scRNA analysis pipeline

Language: Python - Size: 118 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

GERMAN00VP/TFM_GERMAN_VALLEJO

My final project of the Master's in Bioinformatics and Computational Biology.

Language: Jupyter Notebook - Size: 22 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

gloknar/Protocolo-actualizado-R4

Optimización del protocolo de Xiao et al. para el análisis de scRNA-seq en R.

Language: HTML - Size: 682 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

EBrivio/sex_stress

Original scripts for the manuscript "Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus", Brivio et al. Cell Reports, 2023

Language: Jupyter Notebook - Size: 47.9 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

studyfranco/GNEA

In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.

Language: R - Size: 21.7 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

sabyadg/Github-Wilson_data_analysis

sc-RNA-seq data analysis of cardiac development in zebrafish

Language: Jupyter Notebook - Size: 7.58 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0