Topic: "phylogenomics"
INDEINS/DENV-OUTBREAK
Genomic surveillance for Dengue peruvian outbreaks
Language: Shell - Size: 543 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
V-Z/kdetrees Fork of grady/kdetrees
R package for identifying discordant phylogenetic trees in a sample
Language: R - Size: 2.21 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
QUB-Simpson-lab/paper-sars-cov-2-intros-to-ireland
SARS-CoV-2 introductions to the island of Ireland
Language: Jupyter Notebook - Size: 24.4 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
leahshizuru/bioinformatic_notebook
Bioinformatic work for a phylogenomic study on ʻekaha kū moana (black corals) collected in the Hawaiian Archipelago
Size: 2.26 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
invertome/invertome.github.io Fork of academicpages/academicpages.github.io
Exploring the diversity within non traditional model organisms | Omics Tools & Analyses | Genomics, Epigenomics, Metagenomics, Transcriptomics
Language: JavaScript - Size: 49.5 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
jackpayette/Nitrilase
Nitrilase molecular clock node age analysis
Language: Jupyter Notebook - Size: 3.14 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
gerthmicha/postpb
A shiny app to summarize and evaluate the results of Bayesian phylogenetic analyses
Language: Raku - Size: 24 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
sghignone/MrBayes
MrBayes, a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.
Size: 5.86 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
NeLLi-team/sgtree
Simple Genome Tree (SGTree)
Language: Python - Size: 34.1 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
hhandika/charset-extractor
Extract NEXUS partition blocks from a collection of concatenated alignments
Language: Rust - Size: 1.95 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
pebgroup/Dypsidinae_species_tree
Reconstructing the species tree of palm subtribe Dypsidinae using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551)
Language: Python - Size: 827 KB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
PriyaLakr/coreGenomePhylogeny
Script to design core genome phylogeny using bacterial genome assemblies
Language: Shell - Size: 64.5 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
szhan/rhododb
Phylogenomic resource to study the community ecology of the red algae
Language: Python - Size: 12 MB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
pebgroup/pos_phylo_biogeo
Species-level phylogeny and biogeography of the POS-clade (Arecaceae) with special focus on the disjunct distribution of Orania, using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551) • Second part: testing the 'time-for-speciation' hypothesis in Madagascan palms
Language: R - Size: 21.4 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
altingia/A-pro Fork of chaoszhang/A-pro
ASTRAL for PaRalogs and Orthologs
Size: 39.8 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
SWittouck/lacto_genera
Genome-based taxonomy of Lactobacillaceae on the genus level
Language: R - Size: 78.4 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
arzwa/pal2cal
yes indeed
Language: Python - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
bettycatherine/Intron-extraction
Intron extraction procedure
Language: Perl - Size: 6.84 KB - Last synced at: 10 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
camayal/Some-Scripts
Repository for different one-file scripts (Phylogenetics, Bioinformatics, Name managers, etc.)
Language: Python - Size: 43.9 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
pblischak/fluidigm2purc
Automated processing and haplotype inference for double-barcoded PCR amplicons
Language: Python - Size: 474 KB - Last synced at: 22 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
YogiOnBioinformatics/Molecular-Phylogenomics-Using-Mega-X
Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.
Size: 119 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
widdowquinn/presentation-2017-11-01-EUPHRESCO
Presentation delivered at the 2017 EUPHRESCO workshop in Edinburgh, 1st November 2017
Language: HTML - Size: 2.29 MB - Last synced at: 3 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
munozalexander/Tumor-Heterogeneity
Assessing tumor heterogeneity in bulk tumor DNA. Simulation of reads from a phylogenetic prior.
Language: Jupyter Notebook - Size: 13.1 MB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
