Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: coral-reefs
Jordan-Pierce/CoralNet-Toolbox
A repository containing tools useful for interacting with CoralNet and other downstream tasks.
Language: Python - Size: 231 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 9 - Forks: 1
laurianeribas-deulofeu/laurianeribas-deulofeu.github.io Fork of melvinchng/business-jekyll-theme
Dr. Lauriane Ribas-Deulofeu Website
Language: HTML - Size: 697 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0
JWicquart/gcrmndb_benthos
Code repository for the GCRMN benthic synthetic dataset
Language: R - Size: 16.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 6 - Forks: 1
Jordan-Pierce/Benthic-Toolbox
Repository for creating object detection and instance segmentation models for deep-sea benthic habitats.
Language: Python - Size: 173 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0
cnr-isti-vclab/TagLab
A CNN based image segmentation tool oriented to marine data analysis
Language: Python - Size: 316 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 71 - Forks: 25
ChiaraDuijser/host-symbiont_interactions_environmental_gradient
R code for reproducing analysis and figures of Pocillopora host-symbiont interactions along an extreme environmental gradient
Size: 156 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0
CourtneyStuart/FL_Patch_Reefs
What drives spatial patterns of sub-adult gray snapper and bluestriped grunt abundances on coral patch reefs off the Florida Keys, USA? 🐠🌊
Language: R - Size: 12 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0
cnr-isti-vclab/DeeplabV3-for-Corals
This code is part of a bigger project about the semantic segmentation of coral reefs for ecological monitoring.
Language: Python - Size: 761 KB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 2
Mcouedel/mcouedel.github.io Fork of daattali/beautiful-jekyll
Dr Marion Couëdel's personal website
Language: HTML - Size: 15.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
hannahbarkley/reefbudgetR
Tools for processing Pacific NCRMP carbonate budgets data
Language: R - Size: 2.46 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0
systems-genomics-lab/coral-microbiome-review
The coral microbiome: Towards an understanding of the molecular mechanisms of coral-microbiota interactions
Language: Shell - Size: 52.3 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
JWicquart/ea_resilience
Hard coral cover resilience in the Coral Triangle in a context of global decline
Language: R - Size: 62.5 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
JWicquart/gcrmn_ctry
Status of coral reef monitoring: An assessment of methods and data at the national level
Language: R - Size: 121 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
JWicquart/fish_growth
Individual back-calculated size-at-age based on otoliths from Pacific coral reef fish species
Language: HTML - Size: 64.3 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 1
sroitman/Varadero_coral_microbiome
All code and analyses performed for: Roitman, S., López-Londoño, T., Joseph Pollock, F. et al. Surviving marginalized reefs: assessing the implications of the microbiome on coral physiology and survivorship. Coral Reefs 39, 795–807 (2020).
Size: 8.39 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
Jordan-Pierce/SfM_Back_Projection
Workflow for creating classified Structure from Motion models using Agisoft Metashape.
Language: Python - Size: 102 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0
JayCrlt/Allometric_coral_growth
This repository corresponds to the study: Carlot et al. (2021). Juvenile corals underpin coral reef carbonate production after disturbance. Global Change Biology. https://doi.org/10.1111/gcb.15610
Language: R - Size: 67.9 MB - Last synced: 11 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
Anushka-Punukollu/SeaBloom
SeaBloom is a system which uses AI models (CNNs and RNNs) + LiDAR to detect and pinpoint healthy corals to later selectively breed and transplant.
Language: Jupyter Notebook - Size: 3.69 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
JWicquart/monitoring_reefs
Coral reefs benthic monitoring: spatio-temporal distribution, methods and stakeholders
Language: R - Size: 78.1 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0
lukaseamus/DIMRS
Data and R code accompanying article 10.1002/aqc.3814 in Aquatic Conservation: Marine and Freshwater Ecosystems.
Language: R - Size: 4 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
JayCrlt/Coral_Physiology
This repository corresponds to the study: Carlot et al. (2022). Scaling up calcification, respiration, and photosynthesis rates of six prominent coral taxa. Ecology and Evolution. https://doi.org/10.1002/ece3.8613
Language: R - Size: 106 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
Rare-Technology/ECO_Dashboard
Ecological surveys dashboard
Language: R - Size: 28.8 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1
open-AIMS/MA-GBR-analyses
R scripts for 'Macroalgal cover on coral reefs: spatial, environmental and biotic predictors, and decadal trends in the Great Barrier Reef'
Language: R - Size: 34.2 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
GrantHough/Corally
Rallying together to gather and spread intel on the health of corals and provide coral reef organizations with up-to-date information using ML. (hackathon winner)
Language: Jupyter Notebook - Size: 114 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0
JWicquart/monitoring_workflow
A workflow to integrate ecological monitoring data from different sources
Language: HTML - Size: 4.24 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
henryxsong/Coral-Reefsearchers
Effects of Overfishing on Coral Reef Ecosystems
Language: TeX - Size: 92.3 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
bioTIMEHub/HerbivoreForageScaling
Study on the role of body size, species identity, and functional traits on foraging area of herbivorous reef fishes
Language: R - Size: 882 KB - Last synced: 5 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
jeibloo/Coral-Death
Visualize and predict the death of the coral reefs.
Language: Python - Size: 11.6 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
jason-rietzke/CoralReef
experimental perlin-noise weekend-project ends up being a mesmerising screensaver
Language: JavaScript - Size: 32.2 KB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
eelabfiu/seasonal_PR
This repository contains methylation AFLP data as employed in Rodríguez-Casariego et al., Frontiers in Marine Sciences, 2020: "Genome-wide DNA methylation analysis reveals a conserved epigenetic response to seasonal environmental variation in the staghorn coral Acropora cervicornis"
Size: 338 KB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0
NOAA-CHAMP/EISES
NOAA-CHAMP Environmental Information Synthesizer for Expert Systems (EISES)
Language: BlitzBasic - Size: 83.9 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 4
