pymc-devs/pymc

Bayesian Modeling and Probabilistic Programming in Python

Language: Python - Size: 508 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8,135 - Forks: 1,921

dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

Language: Python - Size: 32.8 MB - Last synced: 4 days ago - Pushed: 16 days ago - Stars: 1,428 - Forks: 430

avehtari/BDA_py_demos

Bayesian Data Analysis demos for Python

Language: Jupyter Notebook - Size: 12.2 MB - Last synced: 30 days ago - Pushed: 8 months ago - Stars: 970 - Forks: 296

JavierAntoran/Bayesian-Neural-Networks

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

Language: Jupyter Notebook - Size: 15.6 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 1,697 - Forks: 289

stan-dev/rstan

RStan, the R interface to Stan

Language: R - Size: 190 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 1,001 - Forks: 262

JWarmenhoven/DBDA-python

Doing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code

Language: Jupyter Notebook - Size: 73.9 MB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 664 - Forks: 258

pyro-ppl/numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Language: Python - Size: 57.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 2,057 - Forks: 220

TuringLang/Turing.jl

Bayesian inference with probabilistic programming.

Language: Julia - Size: 32.6 MB - Last synced: about 22 hours ago - Pushed: 1 day ago - Stars: 1,977 - Forks: 213

avehtari/BDA_R_demos

Bayesian Data Analysis demos for R

Language: HTML - Size: 168 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 552 - Forks: 204

MLWhiz/data_science_blogs

A repository to keep track of all the code that I end up writing for my blog posts.

Language: Jupyter Notebook - Size: 211 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 251 - Forks: 201

yell/boltzmann-machines

Boltzmann Machines in TensorFlow with examples

Language: Jupyter Notebook - Size: 354 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 839 - Forks: 135

wiseodd/MCMC

Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.

Language: Python - Size: 7.81 KB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 339 - Forks: 129

owlbarn/owl

Owl - OCaml Scientific Computing @ https://ocaml.xyz

Language: OCaml - Size: 23.6 MB - Last synced: about 5 hours ago - Pushed: about 11 hours ago - Stars: 1,185 - Forks: 120

CompEvol/beast2

Bayesian Evolutionary Analysis by Sampling Trees

Language: Java - Size: 93.8 MB - Last synced: 7 days ago - Pushed: 15 days ago - Stars: 231 - Forks: 82

stan-dev/bayesplot

bayesplot R package for plotting Bayesian models

Language: R - Size: 341 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 414 - Forks: 80

wiseodd/probabilistic-models

Collection of probabilistic models and inference algorithms

Language: Python - Size: 26.4 KB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 241 - Forks: 77

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 32.8 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 233 - Forks: 75

mggg/GerryChain

Use MCMC to analyze districting plans and gerrymanders

Language: Python - Size: 134 MB - Last synced: 6 days ago - Pushed: 18 days ago - Stars: 128 - Forks: 71

beast-dev/beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

Language: Java - Size: 152 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 176 - Forks: 69

huseinzol05/Machine-Learning-Numpy 📦

Gathers Machine learning models using pure Numpy to cover feed-forward, RNN, CNN, clustering, MCMC, timeseries, tree-based, and so much more!

Language: Jupyter Notebook - Size: 44.9 MB - Last synced: 27 days ago - Pushed: almost 5 years ago - Stars: 104 - Forks: 63

stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Language: C - Size: 26.8 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 166 - Forks: 60

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 25.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 132 - Forks: 59

gpstuff-dev/gpstuff

GPstuff - Gaussian process models for Bayesian analysis

Language: MATLAB - Size: 67.2 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 165 - Forks: 59

vortex-exoplanet/VIP

VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.

Language: Python - Size: 372 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 69 - Forks: 55

exoplanet-dev/exoplanet

Fast & scalable MCMC for all your exoplanet needs!

Language: Python - Size: 14.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 200 - Forks: 54

stan-dev/shinystan

shinystan R package and ShinyStan GUI

Language: R - Size: 32.9 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 194 - Forks: 51

cmbant/getdist

MCMC sample analysis, kernel densities, plotting, and GUI

Language: Python - Size: 49.8 MB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 119 - Forks: 50

mxgmn/ConvChain

Bitmap generation from a single example with convolutions and MCMC

Language: C# - Size: 1.54 MB - Last synced: 16 days ago - Pushed: almost 2 years ago - Stars: 730 - Forks: 48

kthohr/mcmc

A C++ library of Markov Chain Monte Carlo (MCMC) methods

Language: C++ - Size: 217 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 148 - Forks: 47

stablemarkets/BayesianTutorials

Implementing MCMC sampling from scratch in R for various Bayesian models

Language: HTML - Size: 188 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 100 - Forks: 46

TuringLang/AdvancedHMC.jl

Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms

Language: Jupyter Notebook - Size: 3.58 MB - Last synced: 28 days ago - Pushed: 6 months ago - Stars: 218 - Forks: 39

avehtari/BDA_m_demos

Bayesian Data Analysis demos for Matlab/Octave

Language: MATLAB - Size: 3.04 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 53 - Forks: 37

minaskar/zeus

⚡️ zeus: Lightning Fast MCMC ⚡️

Language: Python - Size: 197 MB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 218 - Forks: 33

FranxYao/Deep-Generative-Models-for-Natural-Language-Processing

DGMs for NLP. A roadmap.

Size: 32 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 388 - Forks: 33

StatisticalRethinkingJulia/StatisticalRethinking.jl

Julia package with selected functions in the R package `rethinking`. Used in the SR2... projects.

Language: Julia - Size: 1.23 GB - Last synced: 18 days ago - Pushed: 3 months ago - Stars: 383 - Forks: 33

mattiasvillani/BayesLearnCourse

Bayesian Learning course at Stockholm University

Language: PostScript - Size: 155 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 139 - Forks: 31

xfim/ggmcmc

Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference

Language: R - Size: 2.31 MB - Last synced: 19 days ago - Pushed: about 1 year ago - Stars: 109 - Forks: 31

StanJulia/Stan.jl

Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.

Language: Julia - Size: 50.2 MB - Last synced: 3 days ago - Pushed: 20 days ago - Stars: 208 - Forks: 31

bat/BAT.jl

A Bayesian Analysis Toolkit in Julia

Language: Julia - Size: 136 MB - Last synced: 24 days ago - Pushed: 25 days ago - Stars: 193 - Forks: 31

cdslaborg/paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

Language: Fortran - Size: 47.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 236 - Forks: 30

englianhu/binary.com-interview-question

次元期权应征面试题范例。

Language: HTML - Size: 10.9 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 57 - Forks: 30

mjlaine/mcmcstat

MCMC toolbox for Matlab

Language: MATLAB - Size: 2.32 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 68 - Forks: 29

TuringLang/MCMCChains.jl

Types and utility functions for summarizing Markov chain Monte Carlo simulations

Language: Julia - Size: 14.1 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 253 - Forks: 29

florianhartig/BayesianTools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Language: R - Size: 3.85 MB - Last synced: about 6 hours ago - Pushed: 4 months ago - Stars: 113 - Forks: 29

matt-graham/mici

Manifold Markov chain Monte Carlo methods in Python

Language: Python - Size: 22.5 MB - Last synced: 1 day ago - Pushed: 9 months ago - Stars: 209 - Forks: 27

m-clark/bayesian-basics

:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.

Language: Stan - Size: 93 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 82 - Forks: 26

sandialabs/UQTk

Sandia Uncertainty Quantification Toolkit

Language: Fortran - Size: 48.1 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 68 - Forks: 25

floswald/SMM.jl

Simulated Method of Moments for Julia

Language: Julia - Size: 12.6 MB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 73 - Forks: 25

uncomplicate/bayadera

High-performance Bayesian Data Analysis on the GPU in Clojure

Language: Clojure - Size: 1020 KB - Last synced: 16 days ago - Pushed: over 3 years ago - Stars: 360 - Forks: 24

Starfish-develop/Starfish

Tools for Flexible Spectroscopic Inference

Language: Python - Size: 296 MB - Last synced: about 23 hours ago - Pushed: about 1 year ago - Stars: 67 - Forks: 22

hpaulkeeler/posts

Pieces of code that have appeared on my blog with a focus on stochastic simulations.

Language: Python - Size: 279 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 43 - Forks: 21

stan-dev/posterior

The posterior R package

Language: R - Size: 3.75 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 160 - Forks: 21

oliviergimenez/bayesian-stats-with-R

Material for a workshop on Bayesian stats with R

Language: HTML - Size: 61.1 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 67 - Forks: 21

nimble-dev/nimble

The base NIMBLE package for R

Language: C++ - Size: 65 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 146 - Forks: 21

kazewong/flowMC

Normalizing-flow enhanced sampling package for probabilistic inference in Jax

Language: Python - Size: 21.7 MB - Last synced: 4 days ago - Pushed: 8 days ago - Stars: 174 - Forks: 20

FRBNY-DSGE/SMC.jl

Sequential Monte Carlo algorithm for approximation of posterior distributions.

Language: Julia - Size: 114 MB - Last synced: 22 days ago - Pushed: almost 2 years ago - Stars: 66 - Forks: 20

StatisticalRethinkingJulia/SR2TuringPluto.jl

StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)

Language: Julia - Size: 2.21 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 95 - Forks: 20

mschauer/Bridge.jl

A statistical toolbox for diffusion processes and stochastic differential equations. Named after the Brownian Bridge.

Language: Jupyter Notebook - Size: 10.2 MB - Last synced: 8 days ago - Pushed: over 2 years ago - Stars: 109 - Forks: 19

DOI-USGS/geobipy

Geophysical Bayesian Inference in Python. Docs:

Language: Python - Size: 231 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 77 - Forks: 19

StatisticalRethinkingJulia/TuringModels.jl 📦

Implementations of the models from the Statistical Rethinking book with Turing.jl

Language: Julia - Size: 398 MB - Last synced: 7 days ago - Pushed: 8 months ago - Stars: 162 - Forks: 18

luisdamiano/BayesHMM

Full Bayesian Inference for Hidden Markov Models

Language: R - Size: 69.9 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 37 - Forks: 18

NumCosmo/NumCosmo

NumCosmo main code

Language: C - Size: 164 MB - Last synced: about 21 hours ago - Pushed: 2 days ago - Stars: 43 - Forks: 17

TuringLang/AdvancedMH.jl

Robust implementation for random-walk Metropolis-Hastings algorithms

Language: Julia - Size: 366 KB - Last synced: 1 day ago - Pushed: 3 months ago - Stars: 85 - Forks: 17

merliseclyde/BAS

BAS R package https://merliseclyde.github.io/BAS/

Language: C - Size: 146 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 41 - Forks: 16

lxuechen/BDMC

PyTorch implementation of Bidirectional Monte Carlo, Annealed Importance Sampling, and Hamiltonian Monte Carlo.

Language: Python - Size: 3.05 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 49 - Forks: 15

keurfonluu/stochopy

Python library for stochastic numerical optimization

Language: Python - Size: 2.32 MB - Last synced: 9 days ago - Pushed: 12 months ago - Stars: 89 - Forks: 15

handley-lab/anesthetic

Nested Sampling post-processing and plotting

Language: Python - Size: 8.36 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 54 - Forks: 15

jan-rybizki/Chempy

Start with the Chempy tutorial

Language: Jupyter Notebook - Size: 26.2 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 23 - Forks: 14

dm13450/dirichletprocess

Build dirichletprocess objects for data analysis

Language: R - Size: 10.1 MB - Last synced: 15 days ago - Pushed: 9 months ago - Stars: 57 - Forks: 14

nickpoison/Stochastic-Volatility-Models

R Code to accompany "A Note on Efficient Fitting of Stochastic Volatility Models"

Language: R - Size: 2.91 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 10 - Forks: 14

nakatsuma/python_for_bayes

「Pythonによるベイズ統計学入門」の正誤表とPythonコード

Language: Python - Size: 184 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 23 - Forks: 14

bbsBayes/bbsBayes

An R Package for Hierarchical Bayesian Analysis of North American Breeding Bird Survey Data

Language: R - Size: 68.3 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 31 - Forks: 13

mingzhang-yin/SIVI

Using neural network to build expressive hierarchical distribution; A variational method to accurately estimate posterior uncertainty; A fast and general method for Bayesian inference. (ICML 2018)

Language: MATLAB - Size: 744 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 49 - Forks: 13

nakatsuma/probability_and_statistics

Course materials for PROBABILITY AND STATISTICS A/B

Language: Jupyter Notebook - Size: 44.4 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago - Stars: 15 - Forks: 13

rhayes777/PyAutoFit

PyAutoFit: Classy Probabilistic Programming

Language: Python - Size: 25.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 56 - Forks: 12

ChunyuanLI/pSGLD

AAAI & CVPR 2016: Preconditioned Stochastic Gradient Langevin Dynamics (pSGLD)

Language: Matlab - Size: 27.4 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 35 - Forks: 12

StanJulia/CmdStan.jl 📦

CmdStan.jl v6 provides an alternative, older Julia wrapper to Stan's `cmdstan` executable. CmdStan will be deprecated in 2022.

Language: Julia - Size: 32.2 MB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 31 - Forks: 12

Gabriel-p/pythonMCMC

A list of Python-based MCMC & ABC packages

Language: HTML - Size: 210 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 119 - Forks: 12

vsmolyakov/ml

machine learning

Language: Matlab - Size: 3.27 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 34 - Forks: 12

stephenslab/rss

Regression with Summary Statistics.

Language: MATLAB - Size: 5.47 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 44 - Forks: 11

CompEvol/sampled-ancestors

This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

Language: Java - Size: 4.46 MB - Last synced: 7 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 11

aesara-devs/aemcmc

AeMCMC is a Python library that automates the construction of samplers for Aesara graphs representing statistical models.

Language: Python - Size: 383 KB - Last synced: 16 days ago - Pushed: 7 months ago - Stars: 39 - Forks: 11

madsjulia/AffineInvariantMCMC.jl

Affine Invariant Markov Chain Monte Carlo (MCMC) Ensemble sampler

Language: Julia - Size: 740 KB - Last synced: 8 days ago - Pushed: 11 days ago - Stars: 31 - Forks: 11

mr-easy/Gibbs-Sampling-Visualized

Visualization of Gibbs sampling for 2D Gaussian distribution

Language: Jupyter Notebook - Size: 48.7 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 18 - Forks: 11

kthohr/bmlib

Bayesian Macroeconometrics C++ Library

Language: C++ - Size: 566 KB - Last synced: 2 months ago - Pushed: almost 6 years ago - Stars: 7 - Forks: 11

franzmohr/bvartools

Functions for Bayesian inference of vector autoregressive and vector error correction models

Language: R - Size: 31.1 MB - Last synced: 11 days ago - Pushed: 4 months ago - Stars: 29 - Forks: 11

oscaribv/pyaneti

A multi-planet Radial Velocity and Transit modelling software

Language: Jupyter Notebook - Size: 9.27 MB - Last synced: 1 day ago - Pushed: 13 days ago - Stars: 39 - Forks: 11

metrumresearchgroup/Torsten

library of C++ functions that support applications of Stan in Pharmacometrics

Language: C++ - Size: 704 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 50 - Forks: 11

pcubillos/mc3

Python MCMC Sampler

Language: Python - Size: 11.5 MB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 31 - Forks: 11

helske/walker

Bayesian Generalized Linear Models with Time-Varying Coefficients

Language: HTML - Size: 7.64 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 44 - Forks: 10

jangevaare/Pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

Language: Julia - Size: 17.7 MB - Last synced: 18 days ago - Pushed: over 1 year ago - Stars: 71 - Forks: 10

prmiles/pymcmcstat

Python implementation of MATLAB toolbox "mcmcstat"

Language: Jupyter Notebook - Size: 9.06 MB - Last synced: 7 days ago - Pushed: almost 2 years ago - Stars: 67 - Forks: 10

chrism0dwk/covid19uk

Language: Python - Size: 49.7 MB - Last synced: 12 months ago - Pushed: almost 3 years ago - Stars: 11 - Forks: 10

posterior/loom Fork of priorknowledge/loom

A streaming cross-cat inference engine

Language: C++ - Size: 6.39 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 19 - Forks: 10

MultiBUGS/MultiBUGS

Multi-core BUGS for fast Bayesian inference of large hierarchical models

Language: Shell - Size: 16.2 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 30 - Forks: 10

AustinRochford/webmc3

A web interface for exploring PyMC3 traces

Language: Python - Size: 52.1 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 46 - Forks: 9

rogertrullo/Bayesian-Methods-for-Machine-Learning

Bayesian Methods for Machine Learning

Language: Jupyter Notebook - Size: 1.24 MB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 7 - Forks: 9

cleanzr/dblink

Distributed Bayesian Entity Resolution in Apache Spark

Language: Scala - Size: 455 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 51 - Forks: 9

Julia-Tempering/Pigeons.jl

Distributed and parallel sampling from intractable distributions

Language: Julia - Size: 95.2 MB - Last synced: about 23 hours ago - Pushed: 1 day ago - Stars: 72 - Forks: 9

tpapp/LogDensityProblems.jl

A common framework for implementing and using log densities for inference.

Language: Julia - Size: 737 KB - Last synced: 4 days ago - Pushed: 10 months ago - Stars: 39 - Forks: 9