scheidan/BarkerMCMC.jl

gradient based MCMC sampler

Language: Julia - Size: 149 KB - Last synced: about 5 hours ago - Pushed: about 6 hours ago - Stars: 4 - Forks: 0

owlbarn/owl

Owl - OCaml Scientific Computing @ https://ocaml.xyz

Language: OCaml - Size: 23.6 MB - Last synced: about 2 hours ago - Pushed: about 9 hours ago - Stars: 1,185 - Forks: 120

nakatsuma/probability_and_statistics

Course materials for PROBABILITY AND STATISTICS A/B

Language: Jupyter Notebook - Size: 44.4 MB - Last synced: about 10 hours ago - Pushed: about 12 hours ago - Stars: 15 - Forks: 13

stivalaa/ALAAMEE

Autologistic Actor Attribute Model (ALAAM) parameter estimation, simulation, and goodness-of-fit

Language: Python - Size: 12.4 MB - Last synced: about 16 hours ago - Pushed: about 17 hours ago - Stars: 24 - Forks: 2

aidanmrli/montecarlo

A modular high-level library for running high-dimensional Metropolis algorithms across a variety of scaling and tempering conditions.

Language: Python - Size: 3.71 MB - Last synced: about 19 hours ago - Pushed: about 19 hours ago - Stars: 0 - Forks: 0

Julia-Tempering/Pigeons.jl

Distributed and parallel sampling from intractable distributions

Language: Julia - Size: 95.2 MB - Last synced: about 21 hours ago - Pushed: about 23 hours ago - Stars: 72 - Forks: 9

DOI-USGS/geobipy

Geophysical Bayesian Inference in Python. Docs:

Language: Python - Size: 231 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 77 - Forks: 19

TuringLang/Turing.jl

Bayesian inference with probabilistic programming.

Language: Julia - Size: 32.6 MB - Last synced: about 20 hours ago - Pushed: 1 day ago - Stars: 1,977 - Forks: 213

NumCosmo/NumCosmo

NumCosmo main code

Language: C - Size: 164 MB - Last synced: about 19 hours ago - Pushed: 2 days ago - Stars: 43 - Forks: 17

Wytamma/beastiary

Real time and remote MCMC trace monitoring with BEASTIARY.

Language: Vue - Size: 54.2 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 16 - Forks: 2

pyro-ppl/numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Language: Python - Size: 57.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 2,057 - Forks: 220

cnosa/Tesis-

Cuadernos introductorios

Language: Jupyter Notebook - Size: 63.9 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 1 - Forks: 0

pregnault/samplelim

MCMC sampling algorithms for linear inverse models in R

Language: C++ - Size: 20.7 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

cbg-ethz/SCICoNE

Single-cell copy number calling and event history reconstruction.

Language: C++ - Size: 33.9 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 20 - Forks: 6

MauroCE/PersonalWebsite

Personal Website with Blogposts, Achievements and Ideas

Language: HTML - Size: 29.7 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

TuringLang/TuringGLM.jl

Bayesian Generalized Linear models using `@formula` syntax.

Language: Julia - Size: 77.6 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 63 - Forks: 7

TuringLang/MCMCChains.jl

Types and utility functions for summarizing Markov chain Monte Carlo simulations

Language: Julia - Size: 14.1 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 253 - Forks: 29

kazewong/flowMC

Normalizing-flow enhanced sampling package for probabilistic inference in Jax

Language: Python - Size: 21.7 MB - Last synced: 3 days ago - Pushed: 8 days ago - Stars: 174 - Forks: 20

EPPIcenter/moire

MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

Language: C++ - Size: 84.9 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 7 - Forks: 3

avehtari/BDA_R_demos

Bayesian Data Analysis demos for R

Language: HTML - Size: 168 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 552 - Forks: 204

EmanuelSommer/bnn_connecting_the_dots

Code for the ICML 2024 paper "Connecting the Dots: Is Mode-Connectedness the Key to Feasible Sample-Based Inference in Bayesian Neural Networks?"

Language: Jupyter Notebook - Size: 2.09 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

mirzaipatrik/Bayesian_HMM

Bayesian parameter estimation of HMMs in Julia

Language: Julia - Size: 4.37 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 3 - Forks: 0

BlueBrain/emodel-generalisation

Generalisation of electrical models of neurons with MCMC

Language: Python - Size: 17.3 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 3 - Forks: 2

SModelS/protomodels

The code for artificial protomodelling, https://arxiv.org/abs/2012.12246

Language: Jupyter Notebook - Size: 315 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 3 - Forks: 1

stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Language: C - Size: 26.8 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 166 - Forks: 60

TuringLang/MCMCDiagnosticTools.jl

Language: Julia - Size: 763 KB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 19 - Forks: 6

madsjulia/AffineInvariantMCMC.jl

Affine Invariant Markov Chain Monte Carlo (MCMC) Ensemble sampler

Language: Julia - Size: 740 KB - Last synced: 8 days ago - Pushed: 11 days ago - Stars: 31 - Forks: 11

oscaribv/pyaneti

A multi-planet Radial Velocity and Transit modelling software

Language: Jupyter Notebook - Size: 9.27 MB - Last synced: 1 day ago - Pushed: 13 days ago - Stars: 39 - Forks: 11

cbg-ethz/BnpC

Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

Language: Python - Size: 230 KB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 17 - Forks: 4

CompEvol/beast2

Bayesian Evolutionary Analysis by Sampling Trees

Language: Java - Size: 93.8 MB - Last synced: 7 days ago - Pushed: 15 days ago - Stars: 231 - Forks: 82

dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

Language: Python - Size: 32.8 MB - Last synced: 4 days ago - Pushed: 16 days ago - Stars: 1,428 - Forks: 430

xgarrido/cobaya_utilities

A set of tools to deal with cobaya MCMC

Language: Python - Size: 3.35 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 0 - Forks: 0

mggg/GerryChain

Use MCMC to analyze districting plans and gerrymanders

Language: Python - Size: 134 MB - Last synced: 6 days ago - Pushed: 18 days ago - Stars: 128 - Forks: 71

StanJulia/Stan.jl

Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.

Language: Julia - Size: 50.2 MB - Last synced: 3 days ago - Pushed: 20 days ago - Stars: 208 - Forks: 31

tomicapretto/shiny-hmc

A Shiny app to help people learn (and play with) Hamiltonian Monte Carlo

Language: R - Size: 1.62 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 3 - Forks: 0

minaskar/pocomc

pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation

Language: Python - Size: 23.4 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 54 - Forks: 7

handley-lab/anesthetic

Nested Sampling post-processing and plotting

Language: Python - Size: 8.36 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 54 - Forks: 15

beekill95/numpyro-doing-bayesian

My implementation of John K. Kruschke's Doing Bayesian Data Analysis 2nd edition using Python and Numpyro.

Language: Python - Size: 190 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 6 - Forks: 1

bat/BAT.jl

A Bayesian Analysis Toolkit in Julia

Language: Julia - Size: 136 MB - Last synced: 24 days ago - Pushed: 25 days ago - Stars: 193 - Forks: 31

nabilalibou/brain_source_localization

Localization of brain sources measured by EEG using 3 approaches: Gibbs sampler (Markov chain Monte Carlo algorithm), Minimum Norm Estimates (MNE) and Source Imaging based on Structured Sparsity (SISSY)

Language: MATLAB - Size: 17.3 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 1 - Forks: 0

vortex-exoplanet/VIP

VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.

Language: Python - Size: 372 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 69 - Forks: 55

knottwill/Bayesian-NUTS

Bayesian inference using the No-U-Turn sampler.

Language: Python - Size: 1.87 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 0 - Forks: 0

exoplanet-dev/exoplanet

Fast & scalable MCMC for all your exoplanet needs!

Language: Python - Size: 14.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 200 - Forks: 54

pymc-devs/pymc

Bayesian Modeling and Probabilistic Programming in Python

Language: Python - Size: 508 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8,135 - Forks: 1,921

englianhu/binary.com-interview-question

次元期权应征面试题范例。

Language: HTML - Size: 10.9 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 57 - Forks: 30

nimble-dev/nimble

The base NIMBLE package for R

Language: C++ - Size: 65 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 146 - Forks: 21

NREL/EvoProtGrad

Directed evolution of proteins in sequence space with gradients

Language: Jupyter Notebook - Size: 9.66 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 34 - Forks: 4

CarolMoore19/Business-Self-Sanctioning-of-Russia

Bayesian Machine Learning with PYMC3. Data from the Kyiv School of Economics.

Language: Jupyter Notebook - Size: 7.51 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

cmbant/getdist

MCMC sample analysis, kernel densities, plotting, and GUI

Language: Python - Size: 49.8 MB - Last synced: 3 days ago - Pushed: about 1 month ago - Stars: 119 - Forks: 50

cdslaborg/paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

Language: Fortran - Size: 47.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 236 - Forks: 30

merliseclyde/BAS

BAS R package https://merliseclyde.github.io/BAS/

Language: C - Size: 146 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 41 - Forks: 16

beast-dev/beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

Language: Java - Size: 152 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 176 - Forks: 69

stan-dev/posterior

The posterior R package

Language: R - Size: 3.75 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 160 - Forks: 21

stdlib-js/nlp-lda

Latent Dirichlet Allocation via collapsed Gibbs sampling.

Language: JavaScript - Size: 1.85 MB - Last synced: 15 days ago - Pushed: about 1 month ago - Stars: 8 - Forks: 0

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 25.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 132 - Forks: 59

ExObsSim/taurex-emcee

taurex-emcee: automated, parallelized atmospheric retrievals with TauREx 3.1 and the emcee sampler

Language: Python - Size: 26.9 MB - Last synced: 7 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

teddygroves/bibat

A batteries-included template for Bayesian data analysis projects

Language: HTML - Size: 37.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 17 - Forks: 2

StatisticalRethinkingJulia/SR2TuringPluto.jl

StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)

Language: Julia - Size: 2.21 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 95 - Forks: 20

mattiasvillani/BayesLearnCourse

Bayesian Learning course at Stockholm University

Language: PostScript - Size: 155 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 139 - Forks: 31

4ment/skyplotr

Language: R - Size: 712 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

stivalaa/EstimNetDirected

Equilibrium Expectation for ERGM parameter estimation for large networks

Language: C - Size: 6.27 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 24 - Forks: 3

sandialabs/UQTk

Sandia Uncertainty Quantification Toolkit

Language: Fortran - Size: 48.1 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 68 - Forks: 25

pcubillos/mc3

Python MCMC Sampler

Language: Python - Size: 11.5 MB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 31 - Forks: 11

rhayes777/PyAutoFit

PyAutoFit: Classy Probabilistic Programming

Language: Python - Size: 25.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 56 - Forks: 12

metrumresearchgroup/Torsten

library of C++ functions that support applications of Stan in Pharmacometrics

Language: C++ - Size: 704 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 50 - Forks: 11

fweber144/shinybrms

An R package providing a GUI ('shiny' app) for the R package 'brms'.

Language: R - Size: 28.8 MB - Last synced: 11 days ago - Pushed: about 1 month ago - Stars: 10 - Forks: 1

chmc-mcmc/mathematica

Markov Chain Monte Carlo

Language: Mathematica - Size: 48.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

microscopic-image-analysis/geosss

Python package implementing ideal and shrinkage-based geodesic slice samplers defined on the n-sphere.

Language: Jupyter Notebook - Size: 2 MB - Last synced: 6 days ago - Pushed: about 2 months ago - Stars: 3 - Forks: 1

centre-for-humanities-computing/tweetopic

Blazing fast topic modelling for short texts.

Language: Python - Size: 2.28 MB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 26 - Forks: 3

hongbo-yao/BayesMTGDS

Trans-dimensional Bayesian joint inversion of magnetotelluric and geomagnetic depth sounding responses to constrain mantle electrical discontinuities

Language: C++ - Size: 1.44 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 7 - Forks: 5

UBC-Stat-ML/blangSDK

Blang's software development kit

Language: Xtend - Size: 3.09 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 23 - Forks: 6

DarkWake9/EP4130

This course is a "starters kit" of useful statistical tools needed for analysis of data. It will discuss usage of statistics in Astronomy and Particle Physics and what tools are need to tackle problems in the above fields. However, the same statistical techniques are used in all branches of Physics and Engineering.

Language: Jupyter Notebook - Size: 6.83 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

covidestim/covidestim

Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

Language: C++ - Size: 9.02 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 27 - Forks: 6

stan-dev/rstan

RStan, the R interface to Stan

Language: R - Size: 190 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 1,001 - Forks: 262

salleuska/fastCPPP

Supplementary code for the paper "Computational methods for fast Bayesian hierarchical model assessment via calibrated posterior p-values."

Language: HTML - Size: 61.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

posterior/loom Fork of priorknowledge/loom

A streaming cross-cat inference engine

Language: C++ - Size: 6.39 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 19 - Forks: 10

complexParide/nmatch

Repository for the NMAtch Model, a Bayesian Network Meta-Analysis (NMA) framework tailored for evaluating team performance in fixed-time sports tournaments, primarily iootball leagues.

Language: Jupyter Notebook - Size: 602 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

itsdfish/DifferentialEvolutionMCMC.jl

A Julia package for Differential Evolution MCMC

Language: Julia - Size: 1.31 MB - Last synced: 22 days ago - Pushed: about 2 months ago - Stars: 14 - Forks: 1

igomezv/IntroMCMC

Introducción al método Monte Carlo y a los métodos Monte Carlo vía Cadenas de Markov (MCMC). Código complementario a un artículo de divulgación publicado en el Boletín de Estadística e Investigación Operativa (BEIO).

Language: Jupyter Notebook - Size: 844 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1

Bisaloo/mcmcensemble Fork of SandaD/MCMCEnsembleSampler

R Package Providing Ensemble Sampler for Affine-Invariant MCMC

Language: R - Size: 31.1 MB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

yomichi/SpinMonteCarlo.jl

Markov chain Monte Carlo solver for lattice spin systems implemented in Julialang

Language: Julia - Size: 702 KB - Last synced: 21 days ago - Pushed: 2 months ago - Stars: 42 - Forks: 7

hugo-qea/BayesianML-Project

This repository contains our work for the validation project of the course Bayesian Machine Learning, 2023/2024, ENS Paris-Saclay, Master MVA. It consists in a thorough study of the paper "Challenges in Markov chain Monte Carlo for Bayesian neural networks" by Theodore Papamarkou et al.

Language: Jupyter Notebook - Size: 13.6 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

Francesco-Zeno-Costanzo/IATBDP

repository per codici per il corso di introduzione alla teoria bayesiana della probabilità

Language: Python - Size: 2.05 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

agarret7/gen-rs

Probabilistic programming in Rust, with modeling and inference separated by a Generative Function Interface (GFI).

Language: Rust - Size: 1.02 MB - Last synced: 11 days ago - Pushed: 2 months ago - Stars: 8 - Forks: 0

StatisticalRethinkingJulia/StatisticalRethinking.jl

Julia package with selected functions in the R package `rethinking`. Used in the SR2... projects.

Language: Julia - Size: 1.23 GB - Last synced: 18 days ago - Pushed: 3 months ago - Stars: 383 - Forks: 33

sunsided/convchain-rs

Bitmap generation from a single example with convolutions and MCMC - a Rust port of ConvChain.

Language: Rust - Size: 34.2 KB - Last synced: 6 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 32.8 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 233 - Forks: 75

Bola382/Telescoping

Aplicação do Algoritmo proposto em https://doi.org/10.1214/21-BA1294 em misturas de regressão t de Student assimétricas.

Language: R - Size: 157 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

posterior/goftests

Generic goodness of fit tests for random plain old data

Language: Python - Size: 91.8 KB - Last synced: 27 days ago - Pushed: 3 months ago - Stars: 11 - Forks: 7

minaskar/zeus

⚡️ zeus: Lightning Fast MCMC ⚡️

Language: Python - Size: 197 MB - Last synced: 3 days ago - Pushed: 3 months ago - Stars: 218 - Forks: 33

4ment/flc

Local clock model using relaxed and strict clocks

Language: Java - Size: 1.25 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 2

TuringLang/AdvancedMH.jl

Robust implementation for random-walk Metropolis-Hastings algorithms

Language: Julia - Size: 366 KB - Last synced: 1 day ago - Pushed: 3 months ago - Stars: 85 - Forks: 17

stan-dev/bayesplot

bayesplot R package for plotting Bayesian models

Language: R - Size: 341 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 414 - Forks: 80

TuringLang/EllipticalSliceSampling.jl

Julia implementation of elliptical slice sampling.

Language: Julia - Size: 417 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 12 - Forks: 5

kthohr/mcmc

A C++ library of Markov Chain Monte Carlo (MCMC) methods

Language: C++ - Size: 217 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 148 - Forks: 47

antcc/rk-bfr

A functional regression framework built on Bayesian inference and RKHS's.

Language: Jupyter Notebook - Size: 237 MB - Last synced: 5 days ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

MikeS96/bayes_statististics

Bayesian Statistics MOOC by Coursera - Solutions in Python

Language: Jupyter Notebook - Size: 34.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 29 - Forks: 5

saforem2/l2hmc-qcd

Application of the L2HMC algorithm to simulations in lattice QCD.

Language: Jupyter Notebook - Size: 874 MB - Last synced: 16 days ago - Pushed: 4 months ago - Stars: 64 - Forks: 7

nicenustian/four-params-mcmc

Provides a c++ code to do a fast MCMC search with 4 params quickly. Performs trilinear interpolation saves the chains and check for convergence. However, use has to provide the4d grid and grid of models.

Language: C++ - Size: 19.5 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

AdrienCorenflos/particle_mala

Gradient-informed particle MCMC methods

Language: Python - Size: 1.51 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 4 - Forks: 0