Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: mcmc
pymc-devs/pymc
Bayesian Modeling and Probabilistic Programming in Python
Language: Python - Size: 508 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8,135 - Forks: 1,921
pyro-ppl/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
Language: Python - Size: 57.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 2,057 - Forks: 220
TuringLang/Turing.jl
Bayesian inference with probabilistic programming.
Language: Julia - Size: 32.6 MB - Last synced: about 21 hours ago - Pushed: 1 day ago - Stars: 1,977 - Forks: 213
JavierAntoran/Bayesian-Neural-Networks
Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more
Language: Jupyter Notebook - Size: 15.6 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 1,697 - Forks: 289
dfm/emcee
The Python ensemble sampling toolkit for affine-invariant MCMC
Language: Python - Size: 32.8 MB - Last synced: 4 days ago - Pushed: 16 days ago - Stars: 1,428 - Forks: 430
owlbarn/owl
Owl - OCaml Scientific Computing @ https://ocaml.xyz
Language: OCaml - Size: 23.6 MB - Last synced: about 4 hours ago - Pushed: about 11 hours ago - Stars: 1,185 - Forks: 120
stan-dev/rstan
RStan, the R interface to Stan
Language: R - Size: 190 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 1,001 - Forks: 262
avehtari/BDA_py_demos
Bayesian Data Analysis demos for Python
Language: Jupyter Notebook - Size: 12.2 MB - Last synced: 30 days ago - Pushed: 8 months ago - Stars: 970 - Forks: 296
yell/boltzmann-machines
Boltzmann Machines in TensorFlow with examples
Language: Jupyter Notebook - Size: 354 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 839 - Forks: 135
mxgmn/ConvChain
Bitmap generation from a single example with convolutions and MCMC
Language: C# - Size: 1.54 MB - Last synced: 16 days ago - Pushed: almost 2 years ago - Stars: 730 - Forks: 48
JWarmenhoven/DBDA-python
Doing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code
Language: Jupyter Notebook - Size: 73.9 MB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 664 - Forks: 258
avehtari/BDA_R_demos
Bayesian Data Analysis demos for R
Language: HTML - Size: 168 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 552 - Forks: 204
stan-dev/bayesplot
bayesplot R package for plotting Bayesian models
Language: R - Size: 341 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 414 - Forks: 80
FranxYao/Deep-Generative-Models-for-Natural-Language-Processing
DGMs for NLP. A roadmap.
Size: 32 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 388 - Forks: 33
StatisticalRethinkingJulia/StatisticalRethinking.jl
Julia package with selected functions in the R package `rethinking`. Used in the SR2... projects.
Language: Julia - Size: 1.23 GB - Last synced: 18 days ago - Pushed: 3 months ago - Stars: 383 - Forks: 33
uncomplicate/bayadera
High-performance Bayesian Data Analysis on the GPU in Clojure
Language: Clojure - Size: 1020 KB - Last synced: 16 days ago - Pushed: over 3 years ago - Stars: 360 - Forks: 24
wiseodd/MCMC
Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.
Language: Python - Size: 7.81 KB - Last synced: about 2 months ago - Pushed: over 6 years ago - Stars: 339 - Forks: 129
TuringLang/MCMCChains.jl
Types and utility functions for summarizing Markov chain Monte Carlo simulations
Language: Julia - Size: 14.1 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 253 - Forks: 29
MLWhiz/data_science_blogs
A repository to keep track of all the code that I end up writing for my blog posts.
Language: Jupyter Notebook - Size: 211 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 251 - Forks: 201
wiseodd/probabilistic-models
Collection of probabilistic models and inference algorithms
Language: Python - Size: 26.4 KB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 241 - Forks: 77
cdslaborg/paramonte
ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.
Language: Fortran - Size: 47.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 236 - Forks: 30
choderalab/openmmtools
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
Language: Python - Size: 32.8 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 233 - Forks: 75
CompEvol/beast2
Bayesian Evolutionary Analysis by Sampling Trees
Language: Java - Size: 93.8 MB - Last synced: 7 days ago - Pushed: 15 days ago - Stars: 231 - Forks: 82
TuringLang/AdvancedHMC.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
Language: Jupyter Notebook - Size: 3.58 MB - Last synced: 28 days ago - Pushed: 6 months ago - Stars: 218 - Forks: 39
minaskar/zeus
β‘οΈ zeus: Lightning Fast MCMC β‘οΈ
Language: Python - Size: 197 MB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 218 - Forks: 33
matt-graham/mici
Manifold Markov chain Monte Carlo methods in Python
Language: Python - Size: 22.5 MB - Last synced: about 24 hours ago - Pushed: 9 months ago - Stars: 209 - Forks: 27
StanJulia/Stan.jl
Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.
Language: Julia - Size: 50.2 MB - Last synced: 3 days ago - Pushed: 20 days ago - Stars: 208 - Forks: 31
exoplanet-dev/exoplanet
Fast & scalable MCMC for all your exoplanet needs!
Language: Python - Size: 14.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 200 - Forks: 54
stan-dev/shinystan
shinystan R package and ShinyStan GUI
Language: R - Size: 32.9 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 194 - Forks: 51
bat/BAT.jl
A Bayesian Analysis Toolkit in Julia
Language: Julia - Size: 136 MB - Last synced: 24 days ago - Pushed: 25 days ago - Stars: 193 - Forks: 31
beast-dev/beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
Language: Java - Size: 152 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 176 - Forks: 69
kazewong/flowMC
Normalizing-flow enhanced sampling package for probabilistic inference in Jax
Language: Python - Size: 21.7 MB - Last synced: 3 days ago - Pushed: 8 days ago - Stars: 174 - Forks: 20
stephaneguindon/phyml
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Language: C - Size: 26.8 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 166 - Forks: 60
gpstuff-dev/gpstuff
GPstuff - Gaussian process models for Bayesian analysis
Language: MATLAB - Size: 67.2 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 165 - Forks: 59
StatisticalRethinkingJulia/TuringModels.jl π¦
Implementations of the models from the Statistical Rethinking book with Turing.jl
Language: Julia - Size: 398 MB - Last synced: 7 days ago - Pushed: 8 months ago - Stars: 162 - Forks: 18
stan-dev/posterior
The posterior R package
Language: R - Size: 3.75 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 160 - Forks: 21
kthohr/mcmc
A C++ library of Markov Chain Monte Carlo (MCMC) methods
Language: C++ - Size: 217 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 148 - Forks: 47
nimble-dev/nimble
The base NIMBLE package for R
Language: C++ - Size: 65 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 146 - Forks: 21
mattiasvillani/BayesLearnCourse
Bayesian Learning course at Stockholm University
Language: PostScript - Size: 155 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 139 - Forks: 31
stan-dev/cmdstanr
CmdStanR: the R interface to CmdStan
Language: R - Size: 25.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 132 - Forks: 59
mggg/GerryChain
Use MCMC to analyze districting plans and gerrymanders
Language: Python - Size: 134 MB - Last synced: 6 days ago - Pushed: 18 days ago - Stars: 128 - Forks: 71
Gabriel-p/pythonMCMC
A list of Python-based MCMC & ABC packages
Language: HTML - Size: 210 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 119 - Forks: 12
cmbant/getdist
MCMC sample analysis, kernel densities, plotting, and GUI
Language: Python - Size: 49.8 MB - Last synced: 3 days ago - Pushed: about 1 month ago - Stars: 119 - Forks: 50
florianhartig/BayesianTools
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Language: R - Size: 3.85 MB - Last synced: about 6 hours ago - Pushed: 4 months ago - Stars: 113 - Forks: 29
mschauer/Bridge.jl
A statistical toolbox for diffusion processes and stochastic differential equations. Named after the Brownian Bridge.
Language: Jupyter Notebook - Size: 10.2 MB - Last synced: 8 days ago - Pushed: over 2 years ago - Stars: 109 - Forks: 19
xfim/ggmcmc
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
Language: R - Size: 2.31 MB - Last synced: 19 days ago - Pushed: about 1 year ago - Stars: 109 - Forks: 31
huseinzol05/Machine-Learning-Numpy π¦
Gathers Machine learning models using pure Numpy to cover feed-forward, RNN, CNN, clustering, MCMC, timeseries, tree-based, and so much more!
Language: Jupyter Notebook - Size: 44.9 MB - Last synced: 27 days ago - Pushed: almost 5 years ago - Stars: 104 - Forks: 63
stablemarkets/BayesianTutorials
Implementing MCMC sampling from scratch in R for various Bayesian models
Language: HTML - Size: 188 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 100 - Forks: 46
StatisticalRethinkingJulia/SR2TuringPluto.jl
StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)
Language: Julia - Size: 2.21 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 95 - Forks: 20
keurfonluu/stochopy
Python library for stochastic numerical optimization
Language: Python - Size: 2.32 MB - Last synced: 9 days ago - Pushed: 12 months ago - Stars: 89 - Forks: 15
TuringLang/AdvancedMH.jl
Robust implementation for random-walk Metropolis-Hastings algorithms
Language: Julia - Size: 366 KB - Last synced: 1 day ago - Pushed: 3 months ago - Stars: 85 - Forks: 17
m-clark/bayesian-basics
:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.
Language: Stan - Size: 93 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 82 - Forks: 26
DOI-USGS/geobipy
Geophysical Bayesian Inference in Python. Docs:
Language: Python - Size: 231 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 77 - Forks: 19
floswald/SMM.jl
Simulated Method of Moments for Julia
Language: Julia - Size: 12.6 MB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 73 - Forks: 25
Julia-Tempering/Pigeons.jl
Distributed and parallel sampling from intractable distributions
Language: Julia - Size: 95.2 MB - Last synced: about 23 hours ago - Pushed: 1 day ago - Stars: 72 - Forks: 9
jangevaare/Pathogen.jl
Simulation, visualization, and inference of individual level infectious disease models with Julia
Language: Julia - Size: 17.7 MB - Last synced: 18 days ago - Pushed: over 1 year ago - Stars: 71 - Forks: 10
vortex-exoplanet/VIP
VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.
Language: Python - Size: 372 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 69 - Forks: 55
mjlaine/mcmcstat
MCMC toolbox for Matlab
Language: MATLAB - Size: 2.32 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 68 - Forks: 29
sandialabs/UQTk
Sandia Uncertainty Quantification Toolkit
Language: Fortran - Size: 48.1 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 68 - Forks: 25
Starfish-develop/Starfish
Tools for Flexible Spectroscopic Inference
Language: Python - Size: 296 MB - Last synced: about 22 hours ago - Pushed: about 1 year ago - Stars: 67 - Forks: 22
oliviergimenez/bayesian-stats-with-R
Material for a workshop on Bayesian stats with R
Language: HTML - Size: 61.1 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 67 - Forks: 21
prmiles/pymcmcstat
Python implementation of MATLAB toolbox "mcmcstat"
Language: Jupyter Notebook - Size: 9.06 MB - Last synced: 7 days ago - Pushed: almost 2 years ago - Stars: 67 - Forks: 10
FRBNY-DSGE/SMC.jl
Sequential Monte Carlo algorithm for approximation of posterior distributions.
Language: Julia - Size: 114 MB - Last synced: 22 days ago - Pushed: almost 2 years ago - Stars: 66 - Forks: 20
saforem2/l2hmc-qcd
Application of the L2HMC algorithm to simulations in lattice QCD.
Language: Jupyter Notebook - Size: 874 MB - Last synced: 16 days ago - Pushed: 4 months ago - Stars: 64 - Forks: 7
TuringLang/TuringGLM.jl
Bayesian Generalized Linear models using `@formula` syntax.
Language: Julia - Size: 77.6 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 63 - Forks: 7
dm13450/dirichletprocess
Build dirichletprocess objects for data analysis
Language: R - Size: 10.1 MB - Last synced: 15 days ago - Pushed: 9 months ago - Stars: 57 - Forks: 14
englianhu/binary.com-interview-question
欑ε ζζεΊεΎι’θ―ι’θδΎγ
Language: HTML - Size: 10.9 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 57 - Forks: 30
rhayes777/PyAutoFit
PyAutoFit: Classy Probabilistic Programming
Language: Python - Size: 25.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 56 - Forks: 12
handley-lab/anesthetic
Nested Sampling post-processing and plotting
Language: Python - Size: 8.36 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 54 - Forks: 15
minaskar/pocomc
pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation
Language: Python - Size: 23.4 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 54 - Forks: 7
avehtari/BDA_m_demos
Bayesian Data Analysis demos for Matlab/Octave
Language: MATLAB - Size: 3.04 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 53 - Forks: 37
cleanzr/dblink
Distributed Bayesian Entity Resolution in Apache Spark
Language: Scala - Size: 455 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 51 - Forks: 9
metrumresearchgroup/Torsten
library of C++ functions that support applications of Stan in Pharmacometrics
Language: C++ - Size: 704 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 50 - Forks: 11
eigenfoo/littlemcmc
A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.
Language: Python - Size: 772 KB - Last synced: 11 days ago - Pushed: about 3 years ago - Stars: 49 - Forks: 8
mingzhang-yin/SIVI
Using neural network to build expressive hierarchical distribution; A variational method to accurately estimate posterior uncertainty; A fast and general method for Bayesian inference. (ICML 2018)
Language: MATLAB - Size: 744 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 49 - Forks: 13
lxuechen/BDMC
PyTorch implementation of Bidirectional Monte Carlo, Annealed Importance Sampling, and Hamiltonian Monte Carlo.
Language: Python - Size: 3.05 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 49 - Forks: 15
AustinRochford/webmc3
A web interface for exploring PyMC3 traces
Language: Python - Size: 52.1 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 46 - Forks: 9
bikestra/bdapy
Reproducing plots of Bayesian Data Analysis (Gelman et al, 3rd Edition) in Python
Language: Python - Size: 1.07 MB - Last synced: 10 months ago - Pushed: about 9 years ago - Stars: 46 - Forks: 8
helske/walker
Bayesian Generalized Linear Models with Time-Varying Coefficients
Language: HTML - Size: 7.64 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 44 - Forks: 10
stephenslab/rss
Regression with Summary Statistics.
Language: MATLAB - Size: 5.47 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 44 - Forks: 11
hpaulkeeler/posts
Pieces of code that have appeared on my blog with a focus on stochastic simulations.
Language: Python - Size: 279 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 43 - Forks: 21
NumCosmo/NumCosmo
NumCosmo main code
Language: C - Size: 164 MB - Last synced: about 20 hours ago - Pushed: 2 days ago - Stars: 43 - Forks: 17
yomichi/SpinMonteCarlo.jl
Markov chain Monte Carlo solver for lattice spin systems implemented in Julialang
Language: Julia - Size: 702 KB - Last synced: 21 days ago - Pushed: 2 months ago - Stars: 42 - Forks: 7
merliseclyde/BAS
BAS R package https://merliseclyde.github.io/BAS/
Language: C - Size: 146 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 41 - Forks: 16
tpapp/LogDensityProblems.jl
A common framework for implementing and using log densities for inference.
Language: Julia - Size: 737 KB - Last synced: 4 days ago - Pushed: 10 months ago - Stars: 39 - Forks: 9
oscaribv/pyaneti
A multi-planet Radial Velocity and Transit modelling software
Language: Jupyter Notebook - Size: 9.27 MB - Last synced: 1 day ago - Pushed: 13 days ago - Stars: 39 - Forks: 11
aesara-devs/aemcmc
AeMCMC is a Python library that automates the construction of samplers for Aesara graphs representing statistical models.
Language: Python - Size: 383 KB - Last synced: 16 days ago - Pushed: 7 months ago - Stars: 39 - Forks: 11
asael697/bayesforecast
Automatic forecasting and Bayesian modeling for time series with Stan
Language: C++ - Size: 9.64 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 38 - Forks: 6
tpapp/DynamicHMCExamples.jl
Examples for Bayesian inference using DynamicHMC.jl and related packages.
Language: Jupyter Notebook - Size: 652 KB - Last synced: 9 days ago - Pushed: 6 months ago - Stars: 37 - Forks: 3
StatisticalRethinkingJulia/MCMCBenchmarks.jl
Comparing performance and results of mcmc options using Julia
Language: Julia - Size: 22.2 MB - Last synced: 21 days ago - Pushed: over 2 years ago - Stars: 37 - Forks: 6
luisdamiano/BayesHMM
Full Bayesian Inference for Hidden Markov Models
Language: R - Size: 69.9 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 37 - Forks: 18
mgorinova/autoreparam
Automatic Reparameterisation of Probabilistic Programs
Language: Python - Size: 623 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 36 - Forks: 3
ChunyuanLI/pSGLD
AAAI & CVPR 2016: Preconditioned Stochastic Gradient Langevin Dynamics (pSGLD)
Language: Matlab - Size: 27.4 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 35 - Forks: 12
kiudee/bayes-skopt
A fully Bayesian implementation of sequential model-based optimization
Language: Python - Size: 7 MB - Last synced: 15 days ago - Pushed: 6 months ago - Stars: 34 - Forks: 5
NREL/EvoProtGrad
Directed evolution of proteins in sequence space with gradients
Language: Jupyter Notebook - Size: 9.66 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 34 - Forks: 4
vsmolyakov/ml
machine learning
Language: Matlab - Size: 3.27 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 34 - Forks: 12
aesara-devs/aehmc
An HMC/NUTS implementation in Aesara
Language: Python - Size: 1.83 MB - Last synced: 8 days ago - Pushed: 11 months ago - Stars: 33 - Forks: 6
ogus/markov-painting
Procedural art generation from Markov Chain
Language: JavaScript - Size: 344 KB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 32 - Forks: 1
SebastianBocquet/pygtc
Make a sweet giant triangle confusogram (GTC) plot
Language: Jupyter Notebook - Size: 26.1 MB - Last synced: 2 months ago - Pushed: 7 months ago - Stars: 32 - Forks: 8
MFreidank/pysgmcmc
Bayesian Deep Learning with Stochastic Gradient MCMC Methods
Language: Python - Size: 12.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 31 - Forks: 9
