climatechangemicrobiology/ProGRN

Prokaryote Gene Regulatory Network (ProGRN) Inference Pipeline

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BrentLab/Dual_Threshold_Optimization

Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It then calculates a permutation based empirical p-value and an FDR

Language: Rust - Size: 34.5 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 4 - Forks: 1

gitter-lab/SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

Language: MATLAB - Size: 20.2 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 11 - Forks: 5

dieterich-lab/dorina

doRiNa - database of posttranscriptional regulatory elements

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AMSSwanglab/scPECA

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Huising-Lab/epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

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jarnokoetsier/HDAC6Network

A novel insight into neurological disorders through HDAC6 protein-protein interactions

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rilletlee/CMTCN

CMTCN: A web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks

Language: R - Size: 10.2 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

zhangjunpeng411/MSLCRN

MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

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BioinformaticsFMRP/Bioc2017.TCGAbiolinks.ELMER

Integrative analysis workshop with TCGAbiolinks and ELMER

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adelagar/HubSpokeLandingZone

Hub and Spoke Landing Zone for either Azure Commercial or Azure Government scenarios.

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gitter-lab/SINGE-supplemental

Supplemental scripts and analyses for the SINGE manuscript

Language: MATLAB - Size: 51.2 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

mushthofa/ASPG

ASP-based attractor computation

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draeger-lab/SBMLsqueezer

Context-sensitive creation of kinetic equations in biochemical networks

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jseidel5/Python-Probabilistic-Regulation-of-Metabolism

Python Implementation of PROM

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higorsmonteiro/networkfibers

Identification and classification of network fibers for general information networks. (C/Python)

Language: Python - Size: 52.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

tanlabcode/arvin

A package that ranks the SNPs using genomic, epigenomic and network based features.

Language: Perl - Size: 4.36 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

tmoerman/hundur

A minimal Python library for gene regulatory network inference.

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