gitter-lab/SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

Language: MATLAB - Size: 20.2 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 11 - Forks: 5

dieterich-lab/dorina

doRiNa - database of posttranscriptional regulatory elements

Language: Jupyter Notebook - Size: 256 KB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 1

AMSSwanglab/scPECA

Size: 1000 Bytes - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

Huising-Lab/epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

Language: HTML - Size: 32.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 2

jarnokoetsier/HDAC6Network

A novel insight into neurological disorders through HDAC6 protein-protein interactions

Language: R - Size: 26.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

rilletlee/CMTCN

CMTCN: A web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks

Language: R - Size: 10.2 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

zhangjunpeng411/MSLCRN

MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

Language: R - Size: 20.5 KB - Last synced: 7 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 3

BioinformaticsFMRP/Bioc2017.TCGAbiolinks.ELMER

Integrative analysis workshop with TCGAbiolinks and ELMER

Size: 113 MB - Last synced: 8 months ago - Pushed: almost 7 years ago - Stars: 6 - Forks: 0

tmoerman/hundur

A minimal Python library for gene regulatory network inference.

Size: 1000 Bytes - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

adelagar/HubSpokeLandingZone

Hub and Spoke Landing Zone for either Azure Commercial or Azure Government scenarios.

Size: 29.3 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

gitter-lab/SINGE-supplemental

Supplemental scripts and analyses for the SINGE manuscript

Language: MATLAB - Size: 51.2 MB - Last synced: 29 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 1

mushthofa/ASPG

ASP-based attractor computation

Language: Python - Size: 5.86 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

draeger-lab/SBMLsqueezer

Context-sensitive creation of kinetic equations in biochemical networks

Language: HTML - Size: 608 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 0

jseidel5/Python-Probabilistic-Regulation-of-Metabolism

Python Implementation of PROM

Language: MATLAB - Size: 35 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0

higorsmonteiro/networkfibers

Identification and classification of network fibers for general information networks. (C/Python)

Language: Python - Size: 52.3 MB - Last synced: 12 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

tanlabcode/arvin

A package that ranks the SNPs using genomic, epigenomic and network based features.

Language: Perl - Size: 4.36 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0