Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: rpy2

Repositories

theislab/anndata2ri

Convert between AnnData and SingleCellExperiment

Language: Python - Size: 178 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 114 - Forks: 16

rpy2/rpy2-arrow

Share Apache Arrow datasets between Python and R.

Language: Python - Size: 583 KB - Last synced: 18 days ago - Pushed: 3 months ago - Stars: 16 - Forks: 3

t-silvers/pyrty

Use R snippets as python functions. Manage R dependencies separately.

Language: Python - Size: 161 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

rpy2/rpy2-Matrix

Mapping of the R package Matrix for rpy2

Language: Python - Size: 691 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

denniswiersma/internship

Code and writings for my internship project at the Transcriptomic Bioinformatics research group at University Medical Center Groningen.

Language: Jupyter Notebook - Size: 6.42 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

trwiley/DINAA-trinomial-update

Python and R scripts written to perform some cleaning work on a dataset of Smithsonian Trinomials taken from American Antiquity issues ranging from 2004 to 2013.

Language: Python - Size: 260 KB - Last synced: 5 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

iAvicenna/PyRacmacs

A complete python interface to Racmacs via rpy2

Language: Python - Size: 2.8 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

rpy2/rpy2-docker

Running rpy2 in Docker containers

Language: Shell - Size: 87.9 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 25 - Forks: 7

louisowen6/Instant_Data_Report

Instant Data Report using R packages 'DataExplorer' in Python

Language: HTML - Size: 1.33 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv.org/abs/2008.02658). These methods combine multiscale testing with deconvolution to idealise patch clamp recordings. They allow to deal with subconductance states and flickering.

Language: Python - Size: 7.84 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

nalomran/PyReQTL

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Language: Python - Size: 3.1 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 10 - Forks: 0

jmwoloso/pychattr

Python Channel Attribution (pychattr) - A Python implementation of the excellent R ChannelAttribution library

Language: Python - Size: 2.08 MB - Last synced: 1 day ago - Pushed: over 1 year ago - Stars: 56 - Forks: 23

marsja/jupyter

Repository containing Jupyter Notebooks for most of the blog posts on my blog. For example, there are data visualization, data manipulation, and data analysis code examples in the Notebooks

Language: Jupyter Notebook - Size: 5.54 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 92 - Forks: 123

Andre-Luis-Lopes-da-Silva/Linear-regression-analysis-of-the-stroke-occurrence-related-the-age

Algorithm in python to determine how many people had stroke by age using linear regression

Language: Jupyter Notebook - Size: 1.46 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

bnediction/profile_binr 📦

PROFILE RNA-seq binarization technique.

Language: Python - Size: 200 KB - Last synced: 18 days ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 1

rpy2/rpy2-r6

rpy2 extension package to faciliate handling of R6 objects

Language: Python - Size: 309 KB - Last synced: 8 days ago - Pushed: 5 months ago - Stars: 3 - Forks: 1

comptelab/serialNMDA

This repository contains all codes necessary to reproduce figures and results reported in Stein, Barbosa et al. (Nature Communications, 2020) from the raw data acquired in human behavioral experiments (data included in the repository), and from the relevant model simulations.

Language: Python - Size: 10.2 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 2