GitHub topics: skeletonization
seung-lab/dijkstra3d
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Language: C++ - Size: 2.53 MB - Last synced at: 1 day ago - Pushed at: 6 months ago - Stars: 81 - Forks: 14
seung-lab/igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Language: Python - Size: 5.63 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 49 - Forks: 22
psweens/Vascular-TDA
Software to analyse the topology of vascular networks.
Language: Python - Size: 5.33 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 10 - Forks: 0
CSolanaM/SkeletonUI
☠️ Elegant skeleton loading animation in lightweight SwiftUI
Language: Swift - Size: 1.15 MB - Last synced at: 8 days ago - Pushed at: 11 months ago - Stars: 920 - Forks: 54
DoNguyenAnhTuan/Skeletonization-Document-Scanner
A Python-based document scanner that uses image processing and skeletonization techniques to detect and extract documents from camera images.
Language: Python - Size: 32.1 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0
meyerls/pc-skeletor
Skeletonization of 3D Point Clouds
Language: Python - Size: 70.2 MB - Last synced at: 7 days ago - Pushed at: 3 months ago - Stars: 183 - Forks: 20
seung-lab/kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Language: C++ - Size: 13.1 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 152 - Forks: 27
navis-org/skeletor
Extraction of 3D skeletons from meshes.
Language: Python - Size: 2.41 MB - Last synced at: 12 days ago - Pushed at: 10 months ago - Stars: 229 - Forks: 27
AsadiAhmad/Image-Skeletonizer
Extracting the structural skeleton of images using morphological operations.
Size: 20.5 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
LingDong-/skeleton-tracing
A new algorithm for retrieving topological skeleton as a set of polylines from binary images
Language: C - Size: 7.97 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 534 - Forks: 65
Botffy/polyskel
Straight skeleton implementation in Python
Language: Python - Size: 240 KB - Last synced at: 23 days ago - Pushed at: over 4 years ago - Stars: 82 - Forks: 22
BeatsKitano/Somo
Somo is a iOS Skeleton-style animation library that's simple enough,and in objective-c
Language: Objective-C - Size: 3.81 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 310 - Forks: 40
BlueBrain/Ultraliser
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
Language: C++ - Size: 9.7 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 28 - Forks: 5
andygeers/Polyskel-Swift
Straight Skeleton algorithm, ported to Swift from the Polyskel Python library
Language: Swift - Size: 201 KB - Last synced at: 18 days ago - Pushed at: almost 5 years ago - Stars: 9 - Forks: 1
YukangWang/DeepFlux
DeepFlux for Skeletons in the wild (CVPR 2019 & IJCV 2020)
Language: C++ - Size: 2.35 MB - Last synced at: 22 days ago - Pushed at: over 4 years ago - Stars: 54 - Forks: 17
seung-lab/RealNeuralNetworks.jl
A unified framework for skeletonization, morphological analysis, and connectivity analysis.
Language: Julia - Size: 5.55 MB - Last synced at: 19 days ago - Pushed at: 10 months ago - Stars: 41 - Forks: 2
LingDong-/skeletonization-js
Javascript implementation of image skeletonization
Language: JavaScript - Size: 7.81 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 43 - Forks: 8
aalavandhaann/Py_BL_MeshSkeletonization
Mesh Skeleton Extraction Using Laplacian Contraction
Language: Python - Size: 45.9 KB - Last synced at: about 2 months ago - Pushed at: over 7 years ago - Stars: 44 - Forks: 7
HaaPut/skeltools
Medial and skeletonization tools
Language: C++ - Size: 913 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1
Mainakdeb/street-urchins
:microscope: Extracting metadata from 3D Sea Urchin bone structure
Language: Jupyter Notebook - Size: 180 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 1
phcerdan/SGEXT
Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.
Language: C++ - Size: 20.7 MB - Last synced at: 6 days ago - Pushed at: 5 months ago - Stars: 5 - Forks: 2
Krissy93/hands-free-project
Repository for the Hands Free Project of MMTLab
Language: Python - Size: 479 MB - Last synced at: 3 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 0
theia-dev/acvq
A collection of scripts to automate the steps for the quantification of vascular-like structures in 3D using Amira, Fiji/ImageJ and WinFiber3D.
Language: Python - Size: 72.3 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
nathantspencer/webknossos_toolkit
A set of tools for manipulation of the .nml, .swc, .zip, and .hoc files generated from webKnossos and related software. Used for processing of segmentation and skeletonization data.
Language: Python - Size: 2.66 MB - Last synced at: 6 days ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 2
japgarrido/Skeletonization-Methods-comparison
This project analyzes two popular skeletonization methods: Zhang and Lee. The aim is to implement, compare, and evaluate the effectiveness of these methods.
Language: Jupyter Notebook - Size: 1.52 MB - Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
uc-vision/smart-tree
Neural Medial Axis Approximation of Point Clouds for 3D Tree Skeletonization
Language: Python - Size: 18.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 20 - Forks: 0
ashkanpakzad/AirQuant
AirQuant is a framework based in MATLAB primarily for extracting airway measurements from fully segmented airways of a chest CT.
Language: MATLAB - Size: 43.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 17 - Forks: 3
LeonSering/axonium
A tool for automatic measurements of axon lengths, the nerve fibers connecting neurons in a brain.
Language: Python - Size: 14.2 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
steviecs/react-fallback
A POC React component library for rendering skeleton states that automatically adapt to the shape of your UI layout while data is being fetched.
Language: TypeScript - Size: 420 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0
esinkarahan/ATA
Along Tract Analysis of Diffusion Weighted Images
Language: MATLAB - Size: 4.18 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 1
mohammaduzair9/Basic-Image-Processing
Implementation of Basic Digital Image Processing Tasks in Python / OpenCV
Language: Python - Size: 31.2 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 142 - Forks: 43
mmkamani7/Skeletonization
In this repository you can see the code for skeletonization of binary images using our novel fuzzy inference system.
Language: Python - Size: 701 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 25 - Forks: 8
aAbdz/CylShapeDecomposition
Cylindrical Shape Decomposition
Language: Python - Size: 1.95 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 4
TonyCooT/algorithm_opca
Реализация алгоритма скелетизации бинарных изображений OPCA (One-Pass Combination Algorithm)
Language: C++ - Size: 67.4 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
postmalloc/skeletonide
Skeletonide is a parallel implementation of Zhang-Suen morphological thinning algorithm written in Halide-lang. Use it for fast skeletonization of binary masks on the GPU.
Language: C++ - Size: 139 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 2
UCSFVisionResearch/Skeletor Fork of lucadellasantina/Skeletor
Create and manipulate digital skeletons
Language: Matlab - Size: 7.81 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
lucadellasantina/Skeletor
Create and manipulate digital skeletons
Language: Matlab - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1
lucadellasantina/NIA Fork of kilho/NIA
Neuron Image Analyzer: Automated and Accurate Extraction of Neuronal Data from Low Quality Images
Language: Matlab - Size: 6.92 MB - Last synced at: almost 2 years ago - Pushed at: almost 9 years ago - Stars: 2 - Forks: 1
mmkamani7/SkeletonMatching
This repository implements skeleton matching algorithm.
Language: Python - Size: 384 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 40 - Forks: 4
Pseudomanifold/Skeleton_Persistence
Persistence-inspired concepts for skeleton analysis
Language: Python - Size: 145 MB - Last synced at: about 2 months ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 1
Gorilla-Lab-SCUT/SkeletonNet
Code and datasets for TPAMI 2021 "SkeletonNet: A Topology-Preserving Solution for Learning Mesh Reconstruction of Object Surfaces from RGB Images "
Language: C++ - Size: 30.4 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 3
MasterCourses/Image-Processing
Digital Image Processing
Language: Python - Size: 16.7 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
Momofil31/skeletonization
Material for a lecture on Skeletonization of binary images. Developed for Signal, Image and Video Course project @unitn
Language: Jupyter Notebook - Size: 10.1 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1
Tendocat/CGAL-skeletonization
Mesh skeletonization in C++
Language: C++ - Size: 37.4 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
karsonkevin2/heatmap-skeletonization
Variable based skeletonization of traversal heatmaps. Uses gradients, region labelling, thresholding, and blurring techniques. Also supports downloading multi-scale imagery from tile servers.
Language: MATLAB - Size: 1.62 MB - Last synced at: 17 days ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0
Sidl419/hand_detection
Кодирование изображений ладоней в векторное описание при помощи скелетизации исходной картинки. Последующей анализ полученных признаковых описаний с целью выявления кластерной структуры.
Language: Python - Size: 72.6 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
constantinpape/skeletor
Tools and wrappers for skeletonization.
Language: Python - Size: 35.2 KB - Last synced at: 3 months ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0
ShashwatNigam99/Digital_Image_Processing_Assignments
All assignments completed as a part of my Digital Image Processing Course
Language: Jupyter Notebook - Size: 31.8 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
nathantspencer/helmstaedter_to_swc
A tiny MATLAB script for converting the skeletonization data provided by Helmstaedter et al., Nature 2013 from .mat format to .swc format.
Language: Matlab - Size: 3.91 KB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
nathantspencer/AfterTrace
A GUI environment for rendering, correcting, and converting between SWC and HOC formats of neuron model data.
Language: C++ - Size: 315 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0