Ecosyste.ms: Repos

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GitHub topics: volumetric-data

seung-lab/igneous

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Language: Python - Size: 5.54 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 40 - Forks: 15

seung-lab/kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Language: C++ - Size: 11.1 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 125 - Forks: 21

seung-lab/tinybrain

Image pyramid generation for grayscale and segmentation image resize.

Language: Python - Size: 1.13 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 9 - Forks: 0

seung-lab/cloud-volume

Read and write Neuroglancer datasets programmatically.

Language: Python - Size: 65.7 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 125 - Forks: 42

mahmoodlab/TriPath

Analysis of 3D pathology samples using weakly supervised AI - Cell

Language: Python - Size: 79.6 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 46 - Forks: 2

rshkarin/quanfima

Quanfima (Quantitative Analysis of Fibrous Materials)

Language: Python - Size: 4.55 MB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 28 - Forks: 16

raidionics/AeroPath

🫁 AeroPath: An airway segmentation benchmark dataset with challenging pathology

Language: Jupyter Notebook - Size: 313 KB - Last synced: 8 days ago - Pushed: 6 months ago - Stars: 23 - Forks: 5

Grimpy101/bvp-tools

A set of tools for BVP (Blocky Volume Package)

Language: Rust - Size: 153 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

wolny/pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

Language: Jupyter Notebook - Size: 291 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1,813 - Forks: 472

seung-lab/zmesh

Marching Cubes & Mesh Simplification on multi-label 3D images.

Language: C++ - Size: 621 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 55 - Forks: 8

seung-lab/chunkflow

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

Language: Python - Size: 9.69 MB - Last synced: 21 days ago - Pushed: about 2 months ago - Stars: 46 - Forks: 8

andyzeng/tsdf-fusion

Fuse multiple depth frames into a TSDF voxel volume.

Language: Cuda - Size: 73.5 MB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 696 - Forks: 134

andyzeng/tsdf-fusion-python

Python code to fuse multiple RGB-D images into a TSDF voxel volume.

Language: Python - Size: 108 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 1,105 - Forks: 251

PedroRavaglia/3D-Reaction-Diffusion

3D reaction diffusion project using WebGL 2.0 and ray casting to visualize the volume data.

Language: JavaScript - Size: 263 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 0

ctom2/lucyd-deconvolution

A Feature-Driven Richardson-Lucy Deconvolution Network

Language: Python - Size: 1.03 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 0

je-santos/syntheticFractures

Matlab codes to create synthetic fractures for multiphase simulation

Language: MATLAB - Size: 13.3 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 12 - Forks: 3

Volume-Data-Suite/vdtk

VDTK is a free and open-source C++ library for 3D image processing, manipulation and file format conversion.

Language: C++ - Size: 133 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ptahmose/SqliteImgDoc

An experiment - use SQLite as a fileformat for multidimensional tiled images (in 2D and 3D)

Language: C - Size: 13.9 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

alexteghipco/volDNN

Relatively flexible examples for building DNNs with volumetric data in pytorch

Language: Python - Size: 223 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

zyl200846/3D-UNet-PyTorch-Implementation

The implementation of 3D-UNet using PyTorch

Language: Python - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 80 - Forks: 26

alvin-yang68/Marching-Cubes

Implementation of the Marching Cubes algorithm on Python.

Language: Jupyter Notebook - Size: 509 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 5

hasibzunair/uniformizing-3D

[MICCAI'2020 PRIME] Uniformizing Techniques to Process CT scans with 3D CNNs for Tuberculosis Severity Estimation.

Language: Jupyter Notebook - Size: 23.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 43 - Forks: 5

aplbrain/bossphorus

A BossDB-like volumetric datastore in Rust

Language: Rust - Size: 259 KB - Last synced: 13 days ago - Pushed: 12 months ago - Stars: 1 - Forks: 1

kuixu/3d-deep-learning

3D Deep Learning works

Size: 16.6 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 143 - Forks: 36

cvlab-epfl/voxel2mesh

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data

Language: Python - Size: 1.43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 89 - Forks: 25

skrasekmichael/NonlinearFilters

Bachelor's thesis - 3D denoising filters

Language: C# - Size: 41.7 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

wangyida/forknet

ForkNet: Adversarial Semantic Scene Completion from a Single Depth Image - ICCV 2019

Language: Python - Size: 2.1 GB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 58 - Forks: 16

DavinderMaverick/VolumeRaycasting

Volume Data Rendering using GPU Raycasting/Raymarching

Language: C++ - Size: 90.7 MB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 8 - Forks: 5

JackHunt/CarDataset 📦

Some 3D models of cars that I used for learning latent shape embeddings.

Size: 1000 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

HIVE-ResearchGroup/volumetric-data-interaction

Interaction with volumetric data such as the arbitrary slicing with a handheld tablet

Language: C# - Size: 171 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

VCL3D/nevergrad Fork of alexd314/nevergrad

Nevergrad Optimizer Benchmarking for 3D Performance Capture

Size: 282 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

hasibzunair/volumetric-viewer

Volumetric Viewer: A dead simple utility script to visualize different slices in volumetric data.

Language: Python - Size: 7.23 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

hofmannu/CLAHE3D

A volume processing toolbox written in C++ and CUDA. Works as standalone C++ application or with a dedicated GUI.

Language: C++ - Size: 11.3 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

hasibzunair/tuberculosis-severity

10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.

Language: Jupyter Notebook - Size: 40.2 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 7 - Forks: 3

seung-lab/contact-points

Find contact points in a 3D Volume.

Language: Python - Size: 438 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 6 - Forks: 0

mjoppich/surfacenet_python

SurfaceNets implementation in python3 // Volumetric Data to STL

Language: Python - Size: 56.6 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

esmitt/2DSlicesRAW

Extract 3 views from a RAW binary-based volume file

Language: C - Size: 1.29 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0