Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: volumetric-data
seung-lab/igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Language: Python - Size: 5.54 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 40 - Forks: 15
seung-lab/kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Language: C++ - Size: 11.1 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 125 - Forks: 21
seung-lab/tinybrain
Image pyramid generation for grayscale and segmentation image resize.
Language: Python - Size: 1.13 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 9 - Forks: 0
seung-lab/cloud-volume
Read and write Neuroglancer datasets programmatically.
Language: Python - Size: 65.7 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 125 - Forks: 42
mahmoodlab/TriPath
Analysis of 3D pathology samples using weakly supervised AI - Cell
Language: Python - Size: 79.6 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 46 - Forks: 2
rshkarin/quanfima
Quanfima (Quantitative Analysis of Fibrous Materials)
Language: Python - Size: 4.55 MB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 28 - Forks: 16
raidionics/AeroPath
🫁 AeroPath: An airway segmentation benchmark dataset with challenging pathology
Language: Jupyter Notebook - Size: 313 KB - Last synced: 8 days ago - Pushed: 6 months ago - Stars: 23 - Forks: 5
Grimpy101/bvp-tools
A set of tools for BVP (Blocky Volume Package)
Language: Rust - Size: 153 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 1
wolny/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
Language: Jupyter Notebook - Size: 291 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1,813 - Forks: 472
seung-lab/zmesh
Marching Cubes & Mesh Simplification on multi-label 3D images.
Language: C++ - Size: 621 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 55 - Forks: 8
seung-lab/chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
Language: Python - Size: 9.69 MB - Last synced: 21 days ago - Pushed: about 2 months ago - Stars: 46 - Forks: 8
andyzeng/tsdf-fusion
Fuse multiple depth frames into a TSDF voxel volume.
Language: Cuda - Size: 73.5 MB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 696 - Forks: 134
andyzeng/tsdf-fusion-python
Python code to fuse multiple RGB-D images into a TSDF voxel volume.
Language: Python - Size: 108 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 1,105 - Forks: 251
PedroRavaglia/3D-Reaction-Diffusion
3D reaction diffusion project using WebGL 2.0 and ray casting to visualize the volume data.
Language: JavaScript - Size: 263 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 0
ctom2/lucyd-deconvolution
A Feature-Driven Richardson-Lucy Deconvolution Network
Language: Python - Size: 1.03 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 0
je-santos/syntheticFractures
Matlab codes to create synthetic fractures for multiphase simulation
Language: MATLAB - Size: 13.3 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 12 - Forks: 3
Volume-Data-Suite/vdtk
VDTK is a free and open-source C++ library for 3D image processing, manipulation and file format conversion.
Language: C++ - Size: 133 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ptahmose/SqliteImgDoc
An experiment - use SQLite as a fileformat for multidimensional tiled images (in 2D and 3D)
Language: C - Size: 13.9 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1
alexteghipco/volDNN
Relatively flexible examples for building DNNs with volumetric data in pytorch
Language: Python - Size: 223 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0
zyl200846/3D-UNet-PyTorch-Implementation
The implementation of 3D-UNet using PyTorch
Language: Python - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 80 - Forks: 26
alvin-yang68/Marching-Cubes
Implementation of the Marching Cubes algorithm on Python.
Language: Jupyter Notebook - Size: 509 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 5
hasibzunair/uniformizing-3D
[MICCAI'2020 PRIME] Uniformizing Techniques to Process CT scans with 3D CNNs for Tuberculosis Severity Estimation.
Language: Jupyter Notebook - Size: 23.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 43 - Forks: 5
aplbrain/bossphorus
A BossDB-like volumetric datastore in Rust
Language: Rust - Size: 259 KB - Last synced: 13 days ago - Pushed: 12 months ago - Stars: 1 - Forks: 1
kuixu/3d-deep-learning
3D Deep Learning works
Size: 16.6 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 143 - Forks: 36
cvlab-epfl/voxel2mesh
Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data
Language: Python - Size: 1.43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 89 - Forks: 25
skrasekmichael/NonlinearFilters
Bachelor's thesis - 3D denoising filters
Language: C# - Size: 41.7 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0
wangyida/forknet
ForkNet: Adversarial Semantic Scene Completion from a Single Depth Image - ICCV 2019
Language: Python - Size: 2.1 GB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 58 - Forks: 16
DavinderMaverick/VolumeRaycasting
Volume Data Rendering using GPU Raycasting/Raymarching
Language: C++ - Size: 90.7 MB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 8 - Forks: 5
JackHunt/CarDataset 📦
Some 3D models of cars that I used for learning latent shape embeddings.
Size: 1000 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
HIVE-ResearchGroup/volumetric-data-interaction
Interaction with volumetric data such as the arbitrary slicing with a handheld tablet
Language: C# - Size: 171 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
VCL3D/nevergrad Fork of alexd314/nevergrad
Nevergrad Optimizer Benchmarking for 3D Performance Capture
Size: 282 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
hasibzunair/volumetric-viewer
Volumetric Viewer: A dead simple utility script to visualize different slices in volumetric data.
Language: Python - Size: 7.23 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1
hofmannu/CLAHE3D
A volume processing toolbox written in C++ and CUDA. Works as standalone C++ application or with a dedicated GUI.
Language: C++ - Size: 11.3 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0
hasibzunair/tuberculosis-severity
10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.
Language: Jupyter Notebook - Size: 40.2 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 7 - Forks: 3
seung-lab/contact-points
Find contact points in a 3D Volume.
Language: Python - Size: 438 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 6 - Forks: 0
mjoppich/surfacenet_python
SurfaceNets implementation in python3 // Volumetric Data to STL
Language: Python - Size: 56.6 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
esmitt/2DSlicesRAW
Extract 3 views from a RAW binary-based volume file
Language: C - Size: 1.29 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0