bibymaths/SequenceAligner

A command-line bioinformatics utility for pairwise sequence comparison with dynamic programming and color-coded visualization.

Language: C++ - Size: 2.85 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

aziele/pairwise-sequence-alignment

A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Language: Python - Size: 44.9 KB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 13 - Forks: 3

kyu999/ssw_aligner

Python implementation of Striped Smith-Waterman Algorithm

Language: C - Size: 886 KB - Last synced at: 24 days ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 4

MariaClaudia7/Parallel-Smith-Waterman

Language: Python - Size: 15.6 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

kmein/fasta Fork of mitchellwrosen/fasta

Implementation of the FASTA algorithm from bioinformatics

Language: Haskell - Size: 6.84 KB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

jimmyliu1326/isPCR

Rapid local alignment search by in silico PCR

Language: Groovy - Size: 1.92 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

MeganQiu/pairwise-alignment-in-BIOINF

Language: Python - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

iamandreatonina/Algorithms_bioinformatics

:computer: Project for the course of Algorithms for Bioinformtics

Language: Python - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

gwirn/golaf

Fuzzy finder using Smith-Waterman algorithm

Language: Go - Size: 134 KB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

GennariAl/Smith-Waterman-with-R

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.

Language: HTML - Size: 16.6 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

bott0n/Needleman-Wunsch-Algorithm

Needleman-Wunsch Algorithm for global alignment and local alignment

Language: Python - Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 10 - Forks: 2

mohmmedfathi/Alignment-Api

Local and Global Alignment API

Language: Python - Size: 64.5 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

olledejong/Sequence-Alignment

A program that can either perform a global, or local sequence alignment

Language: C++ - Size: 34.2 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Amirreza-Mousavi/Protein_Normalized_SW_Similarity_Score

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Language: R - Size: 8.35 MB - Last synced at: 7 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

CharliesCodes/bioinformatics

A compilation of all the programs in my bioinformatics course

Language: Python - Size: 1.34 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Enescigdem/SequenceAlignment

Global and Local Sequence Alignment

Language: Python - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

mgfzemor/Pairwise-sequence-Aligment-Tool

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Language: HTML - Size: 50.8 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 0

Jomat18/Computacion-Molecular-Biologica

Algoritmos para el alineamiento de secuencias de ADN

Language: Python - Size: 343 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

dieterich-lab/siteblast

Rapid and sensitive local alignment of genomic sequences employing motif anchors

Language: C - Size: 866 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

UMCUGenetics/dtwExtended

Extensions for the dtw package in R

Language: R - Size: 68.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0