Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: bayesian-inference

Repositories

XiangyunHuang/data-analysis-in-action

:book: R 语言数据分析实战（写作中） Data Analysis in Action Using R

Language: TeX - Size: 588 MB - Last synced: about 6 hours ago - Pushed: about 7 hours ago - Stars: 61 - Forks: 17

gwnrtools/gwnrtools

Research tools for intermingling gravitational-wave data analysis with numerical relativity

Language: Jupyter Notebook - Size: 44.6 MB - Last synced: about 12 hours ago - Pushed: 1 day ago - Stars: 7 - Forks: 6

TuringLang/Turing.jl

Bayesian inference with probabilistic programming.

Language: Julia - Size: 32.8 MB - Last synced: about 7 hours ago - Pushed: about 10 hours ago - Stars: 1,985 - Forks: 213

kumar-shridhar/PyTorch-BayesianCNN

Bayesian Convolutional Neural Network with Variational Inference based on Bayes by Backprop in PyTorch.

Language: Python - Size: 66.2 MB - Last synced: about 11 hours ago - Pushed: about 1 month ago - Stars: 1,368 - Forks: 321

minaskar/pocomc

pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation

Language: Python - Size: 29.2 MB - Last synced: about 15 hours ago - Pushed: about 21 hours ago - Stars: 60 - Forks: 7

stecrotti/MatrixProductBP.jl

Matrix Product Belief Propagation

Language: Julia - Size: 77.8 MB - Last synced: about 21 hours ago - Pushed: about 21 hours ago - Stars: 3 - Forks: 3

bilby-dev/nessai-bilby

Interface and plugin for using nessai in bilby

Language: Python - Size: 33.2 KB - Last synced: about 1 hour ago - Pushed: about 21 hours ago - Stars: 0 - Forks: 1

haziqj/INLAvaan

An R package for Bayesian structural equation modeling using INLA

Language: R - Size: 1.76 MB - Last synced: about 3 hours ago - Pushed: about 24 hours ago - Stars: 2 - Forks: 0

Eawag-SIAM/SimulatedAnnealingABC.jl

Approximate Bayesian Computation algorithm based on simulated annealing

Language: Julia - Size: 1.01 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 1 - Forks: 0

HVL-ML/ADA511 Fork of pglpm/ADA511

Material for course ADA511 at HVL

Language: TeX - Size: 229 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

ansleybrown1337/bayes-sampler-comparison

A comparison investigation of water sampling methods using Bayesian inference modeling as part of a 2023 study by the CSU Agricultural Water Quality Program

Language: HTML - Size: 130 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

jennalandy/bayesNMF

R package implementing Bayesian NMF using various models and prior structures.

Language: R - Size: 114 MB - Last synced: about 18 hours ago - Pushed: 1 day ago - Stars: 2 - Forks: 1

brylevkirill/notes

Learn about Machine Learning and Artificial Intelligence

Size: 9.48 MB - Last synced: about 3 hours ago - Pushed: over 2 years ago - Stars: 908 - Forks: 235

SPATIAL-Lab/assignR

R package for geographic assignment

Language: R - Size: 52 MB - Last synced: about 14 hours ago - Pushed: 1 day ago - Stars: 15 - Forks: 4

mckinsey/causalnex

A Python library that helps data scientists to infer causation rather than observing correlation.

Language: Python - Size: 22.8 MB - Last synced: about 16 hours ago - Pushed: 10 days ago - Stars: 2,167 - Forks: 254

tohtsky/myFM

A Python/C++ implementation of Bayesian Factorization Machines

Language: C++ - Size: 1.41 MB - Last synced: 2 days ago - Pushed: about 1 year ago - Stars: 57 - Forks: 14

bobkatla/PopSyn_Monash

Population Synthesis in transport modeling

Language: Jupyter Notebook - Size: 98.1 MB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 1 - Forks: 0

elfi-dev/elfi

ELFI - Engine for Likelihood-Free Inference

Language: Python - Size: 2.15 MB - Last synced: about 20 hours ago - Pushed: 2 days ago - Stars: 261 - Forks: 60

pymc-devs/pymc

Bayesian Modeling and Probabilistic Programming in Python

Language: Python - Size: 508 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 8,135 - Forks: 1,921

slimgroup/InvertibleNetworks.jl

A Julia framework for invertible neural networks

Language: Julia - Size: 2.11 MB - Last synced: about 18 hours ago - Pushed: about 20 hours ago - Stars: 147 - Forks: 20

Julia-Tempering/Pigeons.jl

Distributed and parallel sampling from intractable distributions

Language: Julia - Size: 96.7 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 72 - Forks: 9

cbg-ethz/SCICoNE

Single-cell copy number calling and event history reconstruction.

Language: C++ - Size: 33.9 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 20 - Forks: 6

dsilvestro/PyRate

PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

Language: Python - Size: 55.8 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 72 - Forks: 32

FertigLab/CoGAPS

Bayesian MCMC matrix factorization algorithm

Language: C++ - Size: 250 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 54 - Forks: 16

Ninaiskov/ConnDiff-MSBM

Code for paper: Discovering Prominent Differences in Structural and Functional Connectomes Using a Multinomial Stochastic Block Model

Language: Jupyter Notebook - Size: 68 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

baggepinnen/LowLevelParticleFilters.jl

State estimation, smoothing and parameter estimation using Kalman and particle filters.

Language: Julia - Size: 191 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 112 - Forks: 15

mwohlfender/R_overdispersion_cluster_size

Code used in the analysis of the effective reproduction number and the dispersion parameter of SARS-CoV-2.

Language: R - Size: 1.26 GB - Last synced: 2 days ago - Pushed: 10 days ago - Stars: 1 - Forks: 0

probsys/hierarchical-irm

Probabilistic structure discovery for rich relational systems

Language: C++ - Size: 248 KB - Last synced: 9 days ago - Pushed: 12 days ago - Stars: 9 - Forks: 3

pyro-ppl/numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Language: Python - Size: 57.7 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 2,057 - Forks: 220

lizzij/EI

Bayesian Baby :baby_bottle:: ‘Explain Intervention’ (EI) Experiment at Berkeley Early Learning Lab

Language: HTML - Size: 2.8 MB - Last synced: 4 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

MooersLab/jointprob1D

Notes for the jointprob group

Language: HTML - Size: 6.85 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 1 - Forks: 0

florale/multilevelcoda

multilevelcoda R package for Bayesian compositional multilevel modelling

Language: R - Size: 226 MB - Last synced: 2 days ago - Pushed: 4 days ago - Stars: 11 - Forks: 2

jwatowatson/PLATCOV-SAP

Statistical analysis of the PLATCOV trial

Language: R - Size: 125 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

Spinkoo/Simulink-based-inference

This repo contains examples of how to use Simulink simulation to perform simulation-based inference calculations in Python

Language: Jupyter Notebook - Size: 319 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 3 - Forks: 0

sbi-dev/sbi

Simulation-based inference toolkit

Language: Python - Size: 72.1 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 530 - Forks: 128

cdslaborg/paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

Language: Fortran - Size: 52.6 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 243 - Forks: 31

pglpm/ADA511

Material for course ADA511 at HVL

Language: TeX - Size: 229 MB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 3 - Forks: 3

BaM-tools/BaM

BaM (Bayesian Modeling) is a framework aimed at estimating a model using a bayesian approach and using it for prediction, with a particular focus on uncertainty quantification.

Language: Fortran - Size: 5.6 MB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 2 - Forks: 0

CWWhitney/Decision_Analysis_Course

🎓 Uni-Bonn Decision Analysis graduate course, lectures and materials

Language: HTML - Size: 317 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 25 - Forks: 5

ilabcode/pyhgf

PyHGF: A neural network library for predictive coding

Language: Python - Size: 1.48 GB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 37 - Forks: 7

BaRatin-tools/BaRatinAGE

BaRatin Advanced Graphical Environment

Language: Java - Size: 39.1 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

samyam81/Mathematical-Model

A curated collection of mathematical models spanning various disciplines, offering insights and tools for analysis, simulation, and understanding complex phenomena.

Language: Java - Size: 15.6 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

joshspeagle/brutus

Modeling stellar photometry with "brute force" methods

Language: Python - Size: 67.1 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 32 - Forks: 5

latentnetworks/vimure

Variational Inference for Multiply-Reported social network data https://doi.org/10.1093/jrsssa/qnac004

Language: Python - Size: 16.1 MB - Last synced: about 18 hours ago - Pushed: about 19 hours ago - Stars: 12 - Forks: 6

social-protocols/GlobalBrainIteration1.jl 📦

First iteration of an implementation of the Global Brain algorithm.

Language: Julia - Size: 251 KB - Last synced: 10 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

pyro-ppl/pyro

Deep universal probabilistic programming with Python and PyTorch

Language: Python - Size: 83.7 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 8,394 - Forks: 983

erdogant/bnlearn

Python library for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.

Language: Jupyter Notebook - Size: 28.1 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 447 - Forks: 44

sampsapursiainen/zeffiro_interface

Interface for using finite elements in inverse problems with complex domains

Language: MATLAB - Size: 1.09 GB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 22 - Forks: 14

mwohlfender/estRodis

Estimating reproduction number and dispersion parameter from sequence cluster size distribution.

Language: C++ - Size: 9.41 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 1 - Forks: 0

scheidan/BarkerMCMC.jl

gradient based MCMC sampler

Language: Julia - Size: 154 KB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 4 - Forks: 0

joshspeagle/dynesty

Dynamic Nested Sampling package for computing Bayesian posteriors and evidences

Language: Python - Size: 141 MB - Last synced: 10 days ago - Pushed: 2 months ago - Stars: 334 - Forks: 73

fmagrini/bayes-bay

Generalised Bayesian inversion framework

Language: Python - Size: 44.1 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 10 - Forks: 1

GeoscienceAustralia/HiQGA.jl

High Quality Geophysical Analysis provides a general purpose Bayesian and deterministic inversion framework for various geophysical methods and spatially distributed / timeseries data

Language: Julia - Size: 62 MB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 35 - Forks: 5

zhihanyang2022/normalizing-flows-pytorch

Demo PyTorch code for "Variational Inference with Normalizing Flows" (ICML 2015)

Language: Jupyter Notebook - Size: 206 MB - Last synced: 10 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

qsh-zh/Aggregate-Inference-MOT

Inference with Aggregate Data: An Optimal Transport Approach

Size: 278 KB - Last synced: 10 days ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

silicontwin/arborist-app

The cross-platform app for efficiently performing Bayesian causal inference and supervised learning tasks using tree-based models, including BCF, BART, and XBART.

Language: TypeScript - Size: 36.8 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 2 - Forks: 0

bambinos/bambi

BAyesian Model-Building Interface (Bambi) in Python.

Language: Python - Size: 526 MB - Last synced: 10 days ago - Pushed: 19 days ago - Stars: 1,022 - Forks: 116

JavierAntoran/Bayesian-Neural-Networks

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

Language: Jupyter Notebook - Size: 15.6 MB - Last synced: 10 days ago - Pushed: 8 months ago - Stars: 1,757 - Forks: 294

cvlab-epfl/zigzag

Official code for "ZigZag: Universal Sampling-free Uncertainty Estimation Through Two-Step Inference" (TMLR 2024)

Language: Jupyter Notebook - Size: 6.77 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 1 - Forks: 1

ziatdinovmax/gpax

Gaussian Processes for Experimental Sciences

Language: Python - Size: 54.5 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 185 - Forks: 24

aidanscannell/GPJax 📦

Minimal Gaussian process library in JAX with a simple (custom) approach to state management.

Language: Python - Size: 882 KB - Last synced: 11 days ago - Pushed: 5 months ago - Stars: 11 - Forks: 0

sgoldt/reconstructing_memories

Code for "Bayesian reconstruction of memories stored in neural networks from their connectivity" https://arxiv.org/abs/2105.07416

Language: Python - Size: 37.1 KB - Last synced: 12 days ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

IndrajeetPatil/statsExpressions

Tidy data frames and expressions with statistical summaries 📜

Language: R - Size: 36.3 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 307 - Forks: 19

johnveitch/cpnest

Parallel nested sampling

Language: Python - Size: 1.14 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 26 - Forks: 25

mlcolab/Pathfinder.jl

Preheat your MCMC

Language: Julia - Size: 21.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 74 - Forks: 4

acerbilab/pyvbmc

PyVBMC: Variational Bayesian Monte Carlo algorithm for posterior and model inference in Python

Language: Python - Size: 99.5 MB - Last synced: 11 days ago - Pushed: 17 days ago - Stars: 108 - Forks: 4

acerbilab/vbmc

Variational Bayesian Monte Carlo (VBMC) algorithm for posterior and model inference in MATLAB

Language: MATLAB - Size: 24.6 MB - Last synced: about 5 hours ago - Pushed: about 1 year ago - Stars: 213 - Forks: 38

google/bayesnf

Bayesian Neural Field models for prediction in large-scale spatiotemporal datasets

Language: Python - Size: 14.2 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 19 - Forks: 3

mirzaipatrik/Bayesian_HMM

Bayesian parameter estimation of HMMs in Julia

Language: Julia - Size: 4.38 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 3 - Forks: 0

mspronesti/baylib

High-performance library for approximate inference on discrete Bayesian networks on GPU and CPU

Language: C++ - Size: 1.67 MB - Last synced: 10 days ago - Pushed: 8 months ago - Stars: 30 - Forks: 1

hvasbath/beat

Bayesian Earthquake Analysis Tool

Language: Python - Size: 46.7 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 127 - Forks: 42

FRBNY-DSGE/DSGE.jl

Solve and estimate Dynamic Stochastic General Equilibrium models (including the New York Fed DSGE)

Language: Julia - Size: 2.46 GB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 845 - Forks: 217

tobiasodion/bayesian_inference

Project involves the application of bayesian inference using python pgmpy library. The python script modelled the bayes net and obtained some probabilities based on the model.

Language: Python - Size: 1000 Bytes - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

thu-ml/zhusuan

A probabilistic programming library for Bayesian deep learning, generative models, based on Tensorflow

Language: Python - Size: 1.75 MB - Last synced: 10 days ago - Pushed: over 1 year ago - Stars: 2,199 - Forks: 421

janosh/awesome-normalizing-flows

Awesome resources on normalizing flows.

Language: Python - Size: 145 KB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 1,313 - Forks: 116

kkew3/bayeslr-imbalanced

Codebase for "Learn Bayesian Logistic regression from imbalanced data" post.

Language: Jupyter Notebook - Size: 150 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

DynareJulia/Dynare.jl

A Julia rewrite of Dynare: solving, simulating and estimating DSGE models.

Language: Julia - Size: 2.86 MB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 80 - Forks: 17

edwarddramirez/dmbinaries

Code used to constrain dark matter substructure in the solar neighborhood with Gaia eDR3 wide binaries.

Language: Jupyter Notebook - Size: 237 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 0

xichensf/magical

R and MATLAB scripts for MAGICAL

Language: R - Size: 4.02 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 6 - Forks: 0

PrimerLi/maxEntLambda

max entropy method in python, covariance matrix is diagonalized and the Green function and kernel matrix are rotated into the eigen-space.

Language: Python - Size: 427 KB - Last synced: 16 days ago - Pushed: about 3 years ago - Stars: 5 - Forks: 3

blackjax-devs/blackjax

BlackJAX is a Bayesian Inference library designed for ease of use, speed and modularity.

Language: Python - Size: 339 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 727 - Forks: 93

The model predicts the treatment success rate for new TB cases with high accuracy and robustness. Two different approaches: PCA and Bayesian Inference. The Bayesian regression analysis reveals that c_new_sp_tsr and new_sp_fail are significant predictors of the treatment success rate, while other predictors show less certainty in their effects.

Language: Jupyter Notebook - Size: 2.25 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 0