GitHub topics: snrna-seq
epigen/scrnaseq_processing_seurat
A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
Language: R - Size: 1.24 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 27 - Forks: 1
broadinstitute/Tangram
Spatial alignment of single cell transcriptomic data.
Language: Jupyter Notebook - Size: 133 MB - Last synced at: 3 days ago - Pushed at: 2 months ago - Stars: 320 - Forks: 60
epigen/mixscape_seurat
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
Language: R - Size: 114 KB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 24 - Forks: 2
epigen/dea_seurat
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Language: R - Size: 361 KB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 25 - Forks: 11
pranathibinf/sn_RNA_analysis
snRNAseq analysis
Language: Shell - Size: 11.7 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
fls-bioinformatics-core/sc-gex
BCF's single-cell GEX analysis workflows and Shiny App source code
Language: Jupyter Notebook - Size: 322 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
Zhiliang-Bai/Drosophila-longevity
Single-nucleus transcriptomic profiling of gut and paired brain tissues from flies fed with lipid extracts.
Language: R - Size: 66.4 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
LieberInstitute/Habenula_Pilot
habenulaPilot project code repository
Language: HTML - Size: 2.83 GB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
Dougherty-Lab/socop-hyp-snRNAseq
This repository supports our 2025 manuscript, Single-Cell Resolution of Individual Variation in Hypothalamic Neurons Allows Targeted Manipulation Affecting Social Motivation
Language: R - Size: 446 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0
LieberInstitute/DLPFC_snRNAseq
snRNA_seq portion of the spatialDLPFC project
Language: HTML - Size: 633 MB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 6 - Forks: 1
256wangliu/lizardR
A tool for single cell genomics data processing and analysis
Language: Shell - Size: 193 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
tunabirgun/single_cell_rna_sequencing
Workflows for sc/snRNAseq from count data.
Language: R - Size: 1000 Bytes - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
LieberInstitute/TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
Language: R - Size: 24.1 MB - Last synced at: 18 days ago - Pushed at: 9 months ago - Stars: 4 - Forks: 2
agcasamet/snRNASeq-Data
Data of snRNA-Seq analysis related with the paper "Tumor-induced alterations in single-nucleus transcriptome of atrophying muscles indicate enhanced protein degradation and reduced oxidative metabolism"
Language: R - Size: 152 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
getzlab/scrinvex
Single Cell RNA Intron-Exon counting
Language: C++ - Size: 120 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 11 - Forks: 4
cembrowskilab/proteinsearch.py Fork of kaitsull/proteinsearch
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
ComunidadBioInfo/cdsb2020
Taller CDSB: Construyendo flujos de trabajo con RStudio y Bioconductor para datos transcriptómicos de single cell (RNA-seq)
Language: HTML - Size: 47.8 MB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 5
