shakirova-g/Elipsled

Тестовое задание для студии Max-webs

Language: HTML - Size: 6.77 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

lpryszcz/REDiscover

RNA editing discovery from NGS data.

Language: Python - Size: 313 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 2

msk-access/nucleo

Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK

Language: Common Workflow Language - Size: 915 KB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

REGOVAR/Pirus 📦

a REST service to launch pipeline

Language: Python - Size: 2.57 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

telatin/bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Language: Nim - Size: 33.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 45 - Forks: 4

mdshw5/simplesam

Simple pure Python SAM parser and objects for working with SAM records

Language: Python - Size: 133 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 58 - Forks: 8

InAllSenses/mesto

Написание фронтенда для бекенда предоставляемого обучающей платформой

Language: JavaScript - Size: 1.71 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

AndriiNahornyi/goit-markup-tw

Markup (HTML+SASS) #TeamProject (website 'IceCream')🍦

Language: SCSS - Size: 21.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

MatteoSchiavinato/Utilities

General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

Language: Python - Size: 89.8 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 7 - Forks: 6

Mohammedcha/FaceBook-BAM-Quiz-Instant-Game

FaceBook Instant Game - BAM Quiz

Language: JavaScript - Size: 262 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 76 - Forks: 46

biowdl/bam-to-gvcf

A BioWDL workflow for generating gVCF files from BAM files.

Language: wdl - Size: 952 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

bamlab/nest-rabbit-tasks

nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS

Language: TypeScript - Size: 1.39 MB - Last synced: 24 days ago - Pushed: over 1 year ago - Stars: 31 - Forks: 4

embark-lab/BAM-codebook

Data dictionary and procedures for the Body Advocacy Movement Study (2020-). https://embark-lab.github.io/BAM-codebook/

Language: TeX - Size: 918 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 3

ppyne/c64diskutil

Commodore 64 disk image utility

Language: C++ - Size: 88.4 MB - Last synced: 11 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

georgiesamaha/fq2vcf

Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.

Language: Shell - Size: 54.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

mrfearless/InfinityEngineLibraries

Infinity Engine Libraries for assembler x86

Language: Assembly - Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 8 - Forks: 3

alshai/varcount

Outputs alignment coverage over a predefined set of variants

Language: C++ - Size: 59.6 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

rbrtbrnschn/bam-elephant

Card game idea.

Language: TypeScript - Size: 4.59 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

tombch/basecount

Per-position and summary statistics for BAM files

Language: Python - Size: 94.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

llondon6/nrutils_dev

Python API for low-level analysis of NR data: Psi4, strain, modeling, lal+pycbc interface when appropriate

Language: Jupyter Notebook - Size: 288 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 7 - Forks: 5

JerryPan2718/Microbiome-PTR

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

Language: C - Size: 39.1 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

lucasrabiec/NeuralNetworks

Artificial neural networks (BCM, BAM, MLP, SOM, etc.)

Language: C# - Size: 246 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 6 - Forks: 2

rhpvorderman/htspy

Fast pythonic BAM processing according to the HTS format specifications..

Language: C - Size: 278 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 2

TheRoddyWMS/BamToFastqPlugin

This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.

Language: Shell - Size: 237 KB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

HuntsmanCancerInstitute/UMIScripts

Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files

Language: Perl - Size: 209 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 6 - Forks: 0

biopet/bamstats

Language: Scala - Size: 1.02 MB - Last synced: 11 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

biodata-fun/nf_genomics_pipelines

This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

Language: Nextflow - Size: 72.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1

ronin-gw/PyMaSC

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

Language: Python - Size: 1.9 MB - Last synced: 3 days ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

pcantalupo/bam2circos

Visualize your BAM alignments with Circos

Language: Perl - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 3 - Forks: 1

brentp/bpbio

basepair bio: a single binary with many useful genomics subtools.

Language: Nim - Size: 96.7 KB - Last synced: 21 days ago - Pushed: almost 5 years ago - Stars: 6 - Forks: 2

Jeffresh/BAM-neural-network

Octave implementation of BAM network, using it to encode/ decode numbers

Language: MATLAB - Size: 25.4 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

alexpreynolds/convert2bed

Convert common binary and text genomic formats to BED

Language: C - Size: 192 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 2

Lioscro/fqc

Detect single-cell technology that was used to generate a set of FASTQ files or a single BAM file.

Language: Python - Size: 19 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

dantaki/chromCov

Calculate Chromosome Coverage with C++

Language: C++ - Size: 1.14 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

mrfearless/InfinityEngineLibraries64

Infinity Engine Libraries for assembler x64

Language: Assembly - Size: 480 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

lindenb/x11hts

X11 related utilities for hts

Language: C++ - Size: 229 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 4 - Forks: 0

innovate-invent/bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression

Language: Python - Size: 155 KB - Last synced: 19 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

mpieva/jivebunny

Udo Stenzel’s jivebunny — a probabilistic demultiplexer for Illumina sequencing data [MIRROR]

Language: Haskell - Size: 82 KB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

jnarayan81/Chitra

Plot the genome coverage !

Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

AntoineHo/COCOA

Coverage Of COntigs Alignment

Language: C++ - Size: 99.1 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

DaRealFreak/Teeworlds-Docker-Windows-Build

providing a clean windows environment to compile teeworlds for windows

Language: PowerShell - Size: 1000 Bytes - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

dantaki/rgged

Alter or Add Read Group Tags to BAM Files

Language: C++ - Size: 2.08 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1

Cryo99/BOINCstatsBadges

Language: JavaScript - Size: 289 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

mutcianm/tinyfireflies

Fireflies in a jar using charlieplexing and bit angle modulation

Language: CMake - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

martinjvickers/write_sam_from_stream

Writing a SAM file from a stream of data

Language: C++ - Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0