hijizhou/PureLetDeconv

PURE-LET image deconvolution

Language: Java - Size: 73.5 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 9 - Forks: 8

csgroen/deconverse

Bulk RNA-seq deconvolution and benchmarking using single-cell reference profiles

Language: R - Size: 517 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

cansysbio/ConsensusTME

ConsensusTME Gene Sets and R Script

Language: R - Size: 4.39 MB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 29 - Forks: 17

CG1507/ConvNet-Vis

ConvNet-Vis helps to visualize the Deep Convolutional Neural Networks with following methods.

Language: Python - Size: 178 KB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

ctom2/lucyd-deconvolution

A Feature-Driven Richardson-Lucy Deconvolution Network

Language: Python - Size: 1.03 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 0

HyeongseokSon1/CNN_deconvolution

CNN based non-blind deconvolution (presented at ICCP 2017)

Language: C++ - Size: 9.13 MB - Last synced: 9 months ago - Pushed: about 3 years ago - Stars: 20 - Forks: 9

auroramaurizio/periferal_nerve_injury

Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript

Language: Jupyter Notebook - Size: 19.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 2

MacDumi/RAMAN-Deconvolution

Deconvolution of Raman spectra

Language: Python - Size: 646 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 23 - Forks: 10

mdtanker/RIS_basement_sediment

Ross Ice Shelf basement depths and sediment thickness

Language: Jupyter Notebook - Size: 682 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 2

Luisrosario2604/Variational-computing-image-processing

Denoising, Impaiting & Deconvolution with matlab

Language: MATLAB - Size: 24 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 0

AugusteLef/Towards-intra-tumor-heterogeneity-deconvolution-from-bulk-RNA-seq-data

Towards Intra-Tumor Heterogeneity Deconvolution from Bulk RNA-seq data @BoevaLab

Size: 4.08 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

bguo068/posseleff_empirical

Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference

Language: Nextflow - Size: 2.15 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

eonurk/seAMLess

A single cell transcriptomics based deconvolution pipeline for Leukemia

Language: R - Size: 93 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 2

christacaggiano/cell-free-dna-reading-list

Important papers relating to the biology of cell free DNA

Size: 28.3 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 17 - Forks: 3

ctom2/cider

Zero-shot image restoration with embedded Richardson-Lucy deconvolution

Language: Python - Size: 1.49 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

hcherkaoui/pybold

Semi-blind deconvolution for fMRI (BOLD signal)

Language: Python - Size: 176 KB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 5 - Forks: 1

harsh306/SRGAN

Language: Jupyter Notebook - Size: 8.23 MB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 1

BCMSLab/adipo_deconv

Code for the preprint "A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change"

Language: R - Size: 301 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

BioimageAnalysisCoreWEHI/napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

Language: Jupyter Notebook - Size: 169 MB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 11 - Forks: 4

fzimmermann89/bsc

Bachelor Thesis

Language: TeX - Size: 150 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

jhell96/Deep-Blind-Deblur

A deep neural network for kernel-blind image deblurring

Language: HTML - Size: 103 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 10 - Forks: 0

samanta-anupam/Computer-Vision-Assignment

Assignment as given in the course work of Introduction to Computer Vision(CSE527) taken by Prof Roy Shilkrot

Language: Jupyter Notebook - Size: 7.13 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 2

Honchkrow/Deconer

Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator

Language: R - Size: 69.9 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

jeandsantos/peak_deconvolution

App that performs the deconvolution of spectral data into its main components

Language: R - Size: 656 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

yusuke1999/PDRL-deconvolution

Position-Dependent Richardson-Lucy deconvolution

Language: Python - Size: 1.75 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

Danko-Lab/TED

a fully Bayesian approach to deconvolve tumor microenvironment

Language: R - Size: 142 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 61 - Forks: 13

CMUSchwartzLab/RAD

Robust and Accurate Deconvolution

Language: Jupyter Notebook - Size: 111 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 9 - Forks: 2

CMUSchwartzLab/NND

Neural network deconvolution

Language: Jupyter Notebook - Size: 85 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 0

lmassier/hWAT_singlecell

meta-analysis of new and published human WAT single cell data

Language: R - Size: 256 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 0

benjaminpope/sibylla

Gradient Descent Image Reconstruction

Language: Jupyter Notebook - Size: 3.08 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 0

SignalProcessingAudiology/delaTorre_JASA2022

Peer-reviewed article "de la Torre et al. (2022)"

Size: 11.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

XWangLabTHU/ARIC

Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data

Language: Python - Size: 820 KB - Last synced: 13 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 4

ctom2/torch-deconvolution

Implementation of deconvolution algorithms using torch.

Language: Python - Size: 30.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

ShuheZhang-MUMC/Retinal-Image-Blind-Deconvolution

MATLAB code for "Luminosity rectified blind Richardson-Lucy deconvolution for single retinal image restoration"

Language: MATLAB - Size: 35.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

fmi-faim/faim-huygens

Tools to interact with SVI Huygens from Python

Language: Python - Size: 21.5 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

saswat0/Sketchy

Convert Sketch to Real World Images

Language: Jupyter Notebook - Size: 1.18 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 4 - Forks: 0

ChristianOrr/feature-attribution-methods-jax

Suite of methods that create attribution maps from image classification models.

Language: Jupyter Notebook - Size: 1.72 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

eguomin/microImageLib

A collection of 3D image processing functions and applications with GPU implementation

Language: C++ - Size: 80 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 12 - Forks: 4

WeisongZhao/SACD

Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)

Language: MATLAB - Size: 27 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 12 - Forks: 2

samuelselleck/max-iv-xtrace

Methods of removing sensor depth spill, a spatially variant image blurring effect.

Language: Jupyter Notebook - Size: 15.1 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

akuhara/MC3deconv

Bayeisan inversion to recover Green's functions of receiver-side structures from teleseismic waveforms

Language: Fortran - Size: 3.84 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 15 - Forks: 6

luczeng/MotionBlur

Blind deconvolution of motion blur

Language: Python - Size: 55.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 24 - Forks: 1

kidanger/high-noise-deblurring

Efficient Blind Deblurring under High Noise Levels (with online demo)

Language: C - Size: 6.95 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 17 - Forks: 5

pllittle/CSeQTLworkflow

This readme repository contains sample codes for executing steps within our manuscript

Language: HTML - Size: 52.5 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 1

ikalatskaya/Immune-cell-deconvolution-validation

The main focus of this study is a comprehensive comparison between immune cell deconvolution signatures generated by xCell and Cibersort and corresponding flow cytometry data.

Language: R - Size: 186 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

Jarvis73/conv_arithmetic

Convolution and Transposed Convolution in a Matrix Multiplication View

Language: Python - Size: 2.25 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 11 - Forks: 0

Functional-Genomics/CATD

CATD: Critical Assessment of Transcriptomics Deconvolution

Language: R - Size: 69.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

w-hc/pcv

Pixel Consensus Voting for Panoptic Segmentation (CVPR 2020)

Language: Python - Size: 96.7 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 23 - Forks: 3

looninho/CUDAEBL

Use CUDA for eBeam Lithography Simulation

Language: Python - Size: 18.2 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 4 - Forks: 2

RCarloniGertosio/wGMCA

wGMCA open-source code

Language: Jupyter Notebook - Size: 889 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

pmb59/dosymetric-image-reconstruction

Reconstructing dosimetric images using a deconvoluted physical model

Language: MATLAB - Size: 24.4 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

dariober/quadratic-programming-deconvolution

A tutorial on quadratic programming for deconvolution of mixed cell populations using R

Language: TeX - Size: 342 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

hemolearn/hemolearn

Haemodynamic Response Function estimation from fMRI in Python

Language: Python - Size: 1.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

Whadup/weightedFastText Fork of facebookresearch/fastText

Weighted FastText is a library for fast text classification with weighted examples

Language: C++ - Size: 7.6 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 0

Juanx65/DeepDeconv

Deep Deconvolution for Seismic Waves with Real and Simulated Distributed Acoustic Sensing Data: State-of-the-Art Review

Language: Python - Size: 20.9 MB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

abeduplaa/BlindDeconvolutionGPU

Speeding up blind deconvolution of a blurred image by using GPUs

Language: Cuda - Size: 48.4 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 7 - Forks: 0

broadinstitute/temporal-rna-seq-deconvolution

Package for temporal deconvolution of bulk RNA-seq samples using SVI

Language: Jupyter Notebook - Size: 22.8 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

Qiong-Hu/Digital_Image_Processing

Practices of image deblurring, image inpainting, and image classification.

Language: Python - Size: 6.17 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

xtracko/spectre

Deconvolution of hi-res GC/MS spectra

Language: Python - Size: 84 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

crhisto/MuSiC Fork of xuranw/MuSiC

Multi-subject Single Cell Deconvolution

Language: R - Size: 63.1 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

crhisto/MeDeCom Fork of lutsik/MeDeCom

Decomposition of heterogeneous DNA methylomes

Size: 53.5 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

asifzubair/deconR

R package for Bayesian deconvolution of bulk RNAseq data

Language: C++ - Size: 5.73 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

vaibhavhaswani/Anime_GANs

GANs for generating random Anime

Language: Jupyter Notebook - Size: 125 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

alex-lechner/PyTorch-GAN

Creating artificial images with a Generative Adversarial Network written in PyTorch.

Language: Python - Size: 304 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 7 - Forks: 6

liob/non-parametric_deconvolution

Model-Free Deconvolution of 4D DCE MRI scans

Language: Jupyter Notebook - Size: 38.8 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 3 - Forks: 0

Alexisbozio/VAMP-Deconvolution

De-Convolution of images with VAMP algorithm (based on a Bayesian approach)

Language: Matlab - Size: 5.16 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

daved01/deconvolutions

Exploration of deconvolutions, transposed convolutions, and fractionally strided convolutions.

Language: Jupyter Notebook - Size: 327 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

kidanger/degradations-deconvolution

Non blind deconvolution for realistic degradations (saturation, quantization, gamma correction)

Language: C - Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

vaibhav-setia/Image-Processing

Image Deblurring using OpenCV and CPP

Language: Jupyter Notebook - Size: 2.99 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

ivankunyankin/gan

Language: Python - Size: 5.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

somjit101/DCGAN-Gradient-Tape

A study of the use of the Tensorflow GradientTape class for differentiation and custom gradient generation along with its use to implement a Deep-Convolutional Generative Adversarial Network (GAN) to generate images of hand-written digits.

Language: Jupyter Notebook - Size: 181 KB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

susanhen/GapFill

he deconvolution is a method to fill gaps in data, here implemented for the case of 1D.The deconvolution makes use of the convolution theorem and missing information is recovered in the frequency domain.

Language: Python - Size: 1.39 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

Subhayan18/CRUST

R package for clonal deconvolution

Language: R - Size: 12.1 MB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

cpcdoy/img_proc

Blurred Image Reconstruction

Language: C++ - Size: 5.63 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 8 - Forks: 2

cit-bioinfo/WISP

Weighted In Silico Pathology: a novel approach to assess intra-tumoral heterogeneity

Language: R - Size: 18.3 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

gitlost-murali/Deconvolution-for-Num-2-Image

Takes a number and generates the images of those numbers. Trained on MNIST using Deconvolution Neural Networks (Fancy word for Transposed Convolution)

Language: Jupyter Notebook - Size: 449 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

Vedant2311/Image-Clearer

A compilation of some basic and complicated Denoising & Deblurring algorithms that works on images with unknown noise and blur

Language: MATLAB - Size: 185 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sziem/deconv_unet_2d3d

Public copy of the code developed for my Master Thesis with the Bio Nanoimaging group https://nanoimaging.de

Language: Python - Size: 16.8 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

RCarloniGertosio/2DecGMCA

2DecGMCA open-source code (2D adaptation of SDecGMCA)

Language: Jupyter Notebook - Size: 679 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

bgawalt/wav_project

Reconstruct audio from scaled, shifted basis snippets.

Language: Java - Size: 1.03 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0

badcortex/bio_systems_models

Corso "Modelli di sistemi biologici" @UniPv

Language: MATLAB - Size: 5.24 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

mbannick/survDeconvolution

Deconvolution Methods for Survival Data

Language: R - Size: 83 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

Jackie-Chou/pyopencl_deconvolution

a simple deconvolution implemented with pyopencl

Language: Python - Size: 35.2 KB - Last synced: 12 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

mstorath/MumfordShah2D

Algorithms for edge preserving smoothing based on the Mumford-Shah model

Language: MATLAB - Size: 14 MB - Last synced: 11 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 2

MsMatias/MixturePy

Language: Python - Size: 110 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

rashanarshad/react_deconv

Glimpse front end

Language: CSS - Size: 4.35 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

WuZhuoran/deconvolution-tf

Tensorflow Version of [Network Deconvolution](https://github.com/yechengxi/deconvolution)

Language: Python - Size: 7.81 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

YuFengUofR/dataflow_optimizer

A general framework for optimizing DNN dataflow on systolic array

Language: Python - Size: 182 KB - Last synced: 12 months ago - Pushed: about 4 years ago - Stars: 4 - Forks: 0

deepGio/Sketch2Fruits

Turning your sketches into pictures of fruits

Language: Jupyter Notebook - Size: 8.58 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

bwmeyers/tauclean

Python implementation of pulse profile scattering deconvolution

Language: Python - Size: 1.05 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

vit1-irk/clean_lib

Example of using CLEAN deconvolution algorithm

Language: Jupyter Notebook - Size: 2.66 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

mohakpatel/ImageCleaning

Deep learning model to remove noise from microscope images

Language: Jupyter Notebook - Size: 20.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2

hector-sab/Deconvolution-Tensorflow

Function for transpose convolution or 'deconvolution' in tensorflow

Language: Python - Size: 3.91 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

shih-liang/CaImAn-pkgbuild

PKGBUILD of CaImAn for Archlinux

Language: Shell - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0