Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: polyploidy
mgaynor1/AutoPop
R-based autopolyploid population and population genetic simulation
Language: R - Size: 16.7 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 4 - Forks: 0
mgaynor1/nQuack
An R package for predicting ploidal level from sequence data using site-based heterozygosity
Language: C++ - Size: 15.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 6 - Forks: 0
Glfrey/Hijacking_Sourmash
Scripts, information and data for publication in APPS.
Language: Python - Size: 52.7 KB - Last synced: 29 days ago - Pushed: 30 days ago - Stars: 0 - Forks: 0
alethere/mpQTL
github repository for R package mpQTL
Language: R - Size: 587 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0
almeidasilvaf/doubletroubledb
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
Language: R - Size: 2.96 MB - Last synced: 23 days ago - Pushed: 3 months ago - Stars: 4 - Forks: 0
almeidasilvaf/HybridExpress_paper
Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
Language: JavaScript - Size: 11.4 MB - Last synced: 23 days ago - Pushed: 2 months ago - Stars: 1 - Forks: 0
gwct/grampa
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
Language: Python - Size: 68.6 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 11 - Forks: 2
kemcelroy/Pant_rDNAhistones
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
Size: 15.6 KB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
PlantandFoodResearch/MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Language: Python - Size: 15.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 17 - Forks: 3
mmollina/MAPpoly
Genetic maps in autopolyploids
Language: R - Size: 381 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 23 - Forks: 9
rlbaker5/polyploidy_networks
Script and data supporting a Brassica network analysis manuscript submitted to Applications in Plant Sciences
Language: R - Size: 177 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
almeidasilvaf/HybridExpress
An R package for comparative transcriptomic analyses of hybrids and their progenitors
Language: R - Size: 17.3 MB - Last synced: 23 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
arzwa/wgd
Python package and CLI for whole-genome duplication related analyses
Language: Python - Size: 72.2 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 75 - Forks: 40
rosemckeon/ploidy
How does disturbance on a landscape affect the establishment of new polyploid plant species?
Language: R - Size: 2.03 GB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 3 - Forks: 0
Genome-structure-evolution-analysis/AKRUP
AKRUP: ancestral karyotype reconstruction universal pipeline
Language: Python - Size: 35.6 MB - Last synced: 12 days ago - Pushed: 6 months ago - Stars: 2 - Forks: 1
SunPengChuan/wgdi
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Language: Python - Size: 1.21 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 90 - Forks: 19
hannesbecher/shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
Language: R - Size: 1.84 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 1
lauzingaretti/pSBVB
Manual
Language: Roff - Size: 8.08 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 9 - Forks: 3
plantarum/flowPloidy
An R package for flow cytometry histogram analysis
Language: R - Size: 6.41 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 4 - Forks: 0
arzwa/Whale.jl
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Language: Julia - Size: 4.63 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 10 - Forks: 4
jnarayan81/Polyploidism
Estimate the polyploidy
Language: C++ - Size: 91.7 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
szhan/inst-spec
R scripts and data files to test the "instant speciation" hypothesis
Language: R - Size: 806 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0
