arvkevi/tgviz

1000 Genomes Project population visualizations using dimensionality reduction

Language: Python - Size: 51.9 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 5

thierrygosselin/grur

grur: an R package tailored for RADseq data imputations

Language: R - Size: 7.46 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 0

jcvi-plant-genomics/medicmine

MedicMine - an InterMine with Medicago truncatula genomic data

Language: Java - Size: 629 KB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

Computational-Rare-Disease-Genomics-WHG/VuTR

Web app to visualise the consequences of high-impact 5' UTR Variants

Language: JavaScript - Size: 218 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

kaymers/MetaG

MetaG is a comprehensive metagenomic visualization tool. MetaG displays lower dimensional representations of high throughput metagenomic sequence reads using deep-learning techniques. MetaG will provide additional taxonomic details of the composition of a given metagenome using its pipeline based on BLAST.

Language: Python - Size: 11.1 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

umccr/igv Fork of igvteam/igv

Interactive Genome Viewer with built-in Amazon Web Services support

Language: Java - Size: 408 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

jkissing/jcklab-public

Kissinger Research Group Shared Code

Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

epiviz/epiviz-desktop-app

Desktop app for epiviz

Language: JavaScript - Size: 14.3 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 10 - Forks: 0

fjdf/slaMEM

Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array

Language: C - Size: 566 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 10 - Forks: 5

OrangePomeranian/genomics_project

Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees

Size: 32.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

kandarpRJ/epidecodeR

Online version of tool is live

Language: R - Size: 2.31 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 0

BenjaminNarhMadey/R-Codes-for-Plant-Breeding-Genetics-Statistics-and-Genomics

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

Language: R - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0

outbreak-info/R-outbreak-info

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

Language: R - Size: 91.1 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 17 - Forks: 9

bernatgel/CopyNumberPlots

R package to create plots representing copy number data using karyoploteR

Language: R - Size: 2.06 MB - Last synced at: 12 days ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 2

jamesc99/WashU_RepeatBrowser

Interactive Visualization Browser for Transposable Elements (TEs) community

Size: 782 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

RuzhangZhao/savis

Adaptive Visualization for Single-cell RNA-seq

Language: R - Size: 72.3 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

thierrygosselin/gotedna

Guidance on optimal eDNA sampling periods to develop, optimize and interpret monitoring programs

Language: R - Size: 860 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

Robaina/Clinker_Server

Set clinker to be run remotely from a server

Language: PHP - Size: 894 KB - Last synced at: about 16 hours ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

jajokine/Genomics-and-High-Dimensional-Data

MITx - MicroMasters Program on Statistics and Data Science - Data Analysis: Statistical Modeling and Computation in Applications - Second Project

Language: Jupyter Notebook - Size: 1.46 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1

moshi4/plot_genome_align_fig 📦

Plot genome alignment figure using progressiveMauve & genoPlotR

Language: Python - Size: 37 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 16 - Forks: 4

hsaxe/Plotting-Analysis

R shiny web application for visualizing omics data

Language: R - Size: 942 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

brwnj/covdist

simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.

Language: HTML - Size: 87.9 KB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 1

romagnolid/combact 📦

Pipeline to highlight genomic mutations in bacterial genomes

Language: Python - Size: 105 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

AKU-CITRIC-Center-for-Bioinformatics/ncov

Genomic Epidemiology of SARS-CoV-2 in Pakistan

Size: 57.2 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

sooraj14072001/TEAM-GENOMICS_ONE

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

Size: 2.56 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Sahar-DataScience/Antibiotic-Resistance-Detector

The challenge is to build a classifier that can detect ARGs. Using genetic sequences as input, the classifier should be able to identify if a gene is antibiotic resistant or not.

Language: Jupyter Notebook - Size: 2.07 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

AntoineHo/SAVi

Simple Alignment Viewer

Language: Python - Size: 225 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

broadinstitute/gene-hints

Discoverability for gene search :dna: :mag:

Language: Python - Size: 66.2 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 0

The1stMartian/Rshiny_App_GCskew

R-Shiny App displaying the GC Skew of bacterial genomes

Language: HTML - Size: 3.09 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

KrasnitzLab/SCGV

SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

Language: Python - Size: 209 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 2

NickSto/genome-graphic

Generate visualizations of whole genomes or small sequences

Language: Python - Size: 129 KB - Last synced at: almost 2 years ago - Pushed at: over 11 years ago - Stars: 3 - Forks: 1

ghattab/CAPT

Context-Aware Phylogenetic Trees for Phylogeny-based Taxonomy Visualization

Language: JavaScript - Size: 6.57 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

gbwiersum/NUDataSciSummer2020

This is a project for Northwestern's CIS395 course in DataScience. This project implements a pipeline to determine genetic distance between all coronavirus genomes contained in the NIH Coronavirus dataset.

Language: Jupyter Notebook - Size: 11.8 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

intermine/humanmine

HumanMine - an InterMine with human genomic data

Language: Perl - Size: 534 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 5

chiraltraining/ISCB20.10

Project

Size: 4.88 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

daormar/flux-capacitor

Flux Capacitor toolkit for systems biology

Language: Python - Size: 85.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

HMLueken/DNATagger

Windows Forms application for visualizing DNA Sequnces and adding notes to them

Language: C# - Size: 106 KB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

tare/raesymatto

Raesymatto: visualize genomic data

Language: Jupyter Notebook - Size: 85 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Mithilesh1609/Unwrapping-the-COVID-19-genome

This is a python implementation of understanding the genome of covid-19 and compare it with previously well known disease's genome

Language: Jupyter Notebook - Size: 611 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

joycewang914/Genomic_and_Patient_Transfer_Analyasis_of_Resistant_Bacteria

Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.

Language: R - Size: 9.58 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0

chrisgulvik/sars-cov-2-genomic-dashboards Fork of ells/testWikiFunctionality

genomic dashboards for visualizing SARS-CoV-2 genomic analyses

Size: 5.63 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Binomica-Labs/BLSS

A suite of unique bioinformatics tools for the brave explorer.

Language: C# - Size: 229 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 14 - Forks: 1

hello-im-aryss/BIS15W2021_DataScienceforBiologists_R

UC Davis: Data Science for Biologists - R markdown

Language: HTML - Size: 160 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

brentp/bpbio

basepair bio: a single binary with many useful genomics subtools.

Language: Nim - Size: 96.7 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 2

zhuochenbioinfo/ggomics

Visualization tools for genomics analysis based on ggplot2

Language: R - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

sauloal/introgressionbrowser2

Introgression Browser v2.0 - Complete rewrite from the group up of Introgression Browser

Language: JavaScript - Size: 779 KB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

crahal/gwasdiversitymonitor

An early prototype of the GWAS Diversity Monitor, written in Bokeh

Language: Python - Size: 35.3 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

PrashantKuntala/trackhub-demo

Host a UCSC trackhub on GitHub

Language: HTML - Size: 91.5 MB - Last synced at: 19 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

gowthamv441/Genomics

Final Year Project Repository for correlating the personality trait with the diseases

Language: Python - Size: 208 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 0

Bleunomics/Genome-Link-Demo

My first project using Genome Link that integrates Computer Science for Medical purposes (Under Construction)

Language: Python - Size: 2.93 KB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

agouy/vole_genome_analysis

Material for the analysis of Microtus whole genomes

Language: R - Size: 130 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 2

AminMahpour/Wigman

Generate heatmap plots from genomic BigWig data

Language: Python - Size: 678 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

alexpreynolds/tabix-service

A nodejs-based service for requests for tabix-indexed genomic data

Language: JavaScript - Size: 124 KB - Last synced at: 2 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 4

DEIB-GECO/GMQL-WEB

GMQL WEB Interface

Language: JavaScript - Size: 3.53 MB - Last synced at: 2 months ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 3

hmmartiny/Microbesoft

Language: C - Size: 7.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

Arabidopsis-Information-Portal/thalemine

ThaleMine - an InterMine with Arabidopsis genomic data

Language: Java - Size: 1.34 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

rladies-eastlansing/2020-dataviz2.0

DataViz 2.0 | Spring 2020 workshop

Language: HTML - Size: 11.8 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

althonos/botrytis

A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap

Language: Python - Size: 26.6 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

NathanSiemers/FauxFlow

FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm

Language: R - Size: 90.1 MB - Last synced at: 5 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

BobLiterman/ClumposomeViewer

Language: R - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

awaisc/motifOverlapR

Motif Visualisation and multi-omic integration tool

Language: HTML - Size: 87.4 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

NAL-i5K/Assembly_Metrics_Visualization

Visualization based on the calculation result of Assembly Metrics Toolkit. (https://nal-i5k.github.io/Assembly_Metrics_Visualization/)

Language: JavaScript - Size: 33.2 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0