Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: rna
FelixErnst/RNAmodR
:package: RNAmodR: detection of post-transcriptional RNA modifications based on HTS data
Language: R - Size: 92 MB - Last synced: 8 days ago - Pushed: 2 months ago - Stars: 2 - Forks: 0
yikunpku/RNA-MSM
RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
Language: Python - Size: 13.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 35 - Forks: 3
HussainAther/dnapacman
waka waka
Language: Python - Size: 213 KB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 15 - Forks: 1
aristoteleo/dynamo-notebooks
Tutorials of Dynamo usage cases and code to reproduce the manuscript
Language: Jupyter Notebook - Size: 292 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 6 - Forks: 4
mcrewcow/ChaginLab
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
Language: Jupyter Notebook - Size: 23.9 MB - Last synced: 3 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 1
NEKERAFA/AA 📦
Repositorio de Aprendizaje Automático
Language: Matlab - Size: 255 KB - Last synced: 3 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
RNAcentral/rnacentral-sequence-search-embed
Embeddable react component for RNA sequence search.
Language: JavaScript - Size: 46.6 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 5 - Forks: 1
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
Language: Python - Size: 4.96 MB - Last synced: 22 days ago - Pushed: about 1 month ago - Stars: 127 - Forks: 22
StatBiomed/UniTVelo
UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
Language: Jupyter Notebook - Size: 20.2 MB - Last synced: 2 months ago - Pushed: 9 months ago - Stars: 22 - Forks: 9
BGSU-RNA/fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
Language: Python - Size: 32 MB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 15 - Forks: 9
nf-core/lncpipe Fork of likelet/LncPipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Language: Nextflow - Size: 9.05 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 30 - Forks: 16
fomightez/blast-binder
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
Language: Jupyter Notebook - Size: 2.06 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 7 - Forks: 5
nanoporetech/pipeline-polya-diff
Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish
Language: Python - Size: 45.9 KB - Last synced: 27 days ago - Pushed: about 4 years ago - Stars: 9 - Forks: 3
nanoporetech/isONclust2
A tool for de novo clustering of long transcriptomic reads
Language: C++ - Size: 643 KB - Last synced: 27 days ago - Pushed: over 1 year ago - Stars: 13 - Forks: 3
nkvamaks/oligoshell_calc
Oligonucleotide Calculator
Language: JavaScript - Size: 2.53 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
dwarriaz/overwriTE
Interrogating the influence of Transposable Element insertions on transcriptional dynamics
Language: Python - Size: 2.18 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
JLP-BioInf/rnaCrosslinkNF
Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.
Language: R - Size: 38.7 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
sandialabs/CasCollect
A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina sequencing reads
Language: Python - Size: 6.41 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0
Lakshanj98/Distinguish-Sequence-Type_Transcription_Translation
Distinguishes the sequence type. Transcribe the DNA to RNA. Translate the RNA to Protein.
Language: Python - Size: 3.91 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
meeranhussain/RNASeq_Deseq2_Snakemake
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Language: R - Size: 44.9 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
timkartar/RNAscape
Geometry faithful 2D RNA visualization
Language: Python - Size: 7.87 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 0
Lina674/Complementary_DNA_Sequence_Transcription_and_Translation
This project outputs the complementary DNA sequence of an original sequence, transcribes a DNA sequence to RNA, and translates the RNA sequence to the corresponding sequence of amino acids by identifying the codons that make up the latter.
Language: C# - Size: 20.5 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
atfrank/RNACavityMiner
Classifiers to Mine For Ligandable Binding Cavity in RNA
Language: Python - Size: 257 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 1 - Forks: 2
nf-core/cageseq
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
Language: Nextflow - Size: 4.02 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 10 - Forks: 11
EvryRNA/rnadvisor
RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.
Language: Python - Size: 1.96 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0
Gagniuc/Bioinformatics-Algorithms-in-Java-Script
These Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers. These algorithms include more than 120 open-source implementations.
Language: HTML - Size: 274 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1
Gagniuc/RNA-complementarity
This JavaScript implementation detects the areas where two RNA sequences are complementary to each other. All symbols from UTF-8 are accepted by this algorithm.
Language: HTML - Size: 47.9 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 5 - Forks: 0
Gagniuc/DNA-complementarity-alignment-in-JS
This JavaScript implementation detects the areas where two DNA sequences are complementary to each other. All symbols from UTF-8 are accepted by this algorithm.
Language: HTML - Size: 63.5 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 4 - Forks: 0
Gagniuc/Self-sequence-alignment
Self-sequence alignment represents a novel mathematical model for measuring the information content in biological sequences, such as DNA, RNA, or proteins. Nevertheless, the use of this model is not limited to biological sequences. Thus, any symbol inside a sequence can be considered.
Language: HTML - Size: 239 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0
Gagniuc/Local-sequence-alignment-in-JS
This JavaScript implementation detects the areas where two DNA/RNA/protein sequences are similar to each other. All symbols from UTF-8 are accepted by this algorithm.
Language: HTML - Size: 296 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0
Gagniuc/DNA-motif-sequences-to-Sequence-Logos
This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Language: HTML - Size: 106 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0
Gagniuc/Sequence-Logos-based-on-maximum-values
Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
Language: HTML - Size: 44.9 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1
Gagniuc/A-high-discrimination-motif-scanner-and-variable-sensitivity
This is a high discrimination scanner designed to recognise DNA motifs within a long stretch of DNA. Most importantly, this implementation shows how to implement a variable sensitivity for detection, by modifying the pseudocount values.
Language: HTML - Size: 137 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 4 - Forks: 0
Gagniuc/Global-sequence-alignment-in-JS
This implementation makes a global alignment between two strings and it demonstrates the use of the global alignment algorithm.
Language: HTML - Size: 39.1 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1
Gagniuc/Bioinformatics-HTML5-Implementations
These All-in-one Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers.
Language: HTML - Size: 13.3 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1
Gagniuc/Information-Content-vs-Information-Entropy
This is an application designed in HTML5/Javascript of a scanner that makes a comparison between two methods, namely between Shanon entropy (Information entropy) and self-sequence alignment (Information content). Information entropy (IE) and Information content (IC) are two methods that quantitatively measure information.
Language: HTML - Size: 154 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0
Gagniuc/Jupiter-Bioinformatics-V1
Jupiter Bioinformatics (V1) - To find similarities between two words, a manual comparison is required. For words between 4 and 8 letters, such a task can be performed by any of us without the use of a computer. However, what if the objects of comparison are entire phrases/sequences/files?
Language: HTML - Size: 15.8 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 4 - Forks: 1
moltinginstar/addgene-api
An unofficial API for Addgene, the open-source plasmid repository.
Language: Python - Size: 32.2 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
HenrikBengtsson/aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
Language: R - Size: 4.05 MB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 10 - Forks: 3
ukmrs/rnapkin
drawing RNA secondary structure with style; instantly
Language: Rust - Size: 277 KB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 5 - Forks: 0
AlphaPrime7/tidyDenovix
Cleans spectrophotometry data from the Denovix DS-X
Language: R - Size: 2.62 MB - Last synced: 24 days ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
novoalab/m6ABasecaller
An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
Size: 19.5 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 0
TheJacksonLaboratory/isopretGO
Isoform function prediction and interpretation
Language: Java - Size: 15.9 MB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 6 - Forks: 1
scbirlab/streq
🧬 Python utilities for working with nucleotide sequence strings.
Language: Python - Size: 23.4 KB - Last synced: 6 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
eternagame/EternaJS
Eterna game/RNA design interface
Language: TypeScript - Size: 42 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 12 - Forks: 10
cole8888/Gene2Pic
Represents a genetic sequence as an image.
Language: C - Size: 30.9 MB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
fjossinet/RNA-Science-Toolbox
A platform to do RNA science
Language: Jupyter Notebook - Size: 18.4 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 25 - Forks: 9
marcom/ViennaRNA.jl
Julia interface to ViennaRNA for RNA structure prediction and analysis
Language: Julia - Size: 328 KB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 20 - Forks: 1
fjossinet/RNArtistCore
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
Language: Kotlin - Size: 25.7 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 26 - Forks: 5
marcom/RNAstructure.jl
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
Language: Julia - Size: 89.8 KB - Last synced: 17 days ago - Pushed: 5 months ago - Stars: 10 - Forks: 1
wk989898/ARES-implement
ARES implement in PyTorch
Language: Python - Size: 1.42 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 11 - Forks: 2
officialprofile/DynamicRepresentation 📦
R library for graphical and numerical representation of the DNA/RNA sequences.
Language: R - Size: 522 KB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
Vicky-Hunt-Lab/stepRNA
Align short RNA seqeuncing reads to determine the length of of overhang
Language: Python - Size: 97.9 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0
monimaanam/Modomics_Decoder
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
Language: Python - Size: 33.2 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
angegar/IDEA 📦
Real time RNA sequencing and anlysis
Language: Jupyter Notebook - Size: 48.3 MB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1
Rupak09/ImageGuardian
Image Encryption using GENOMICS (Central Dogma algorithm).
Language: Python - Size: 182 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
vassilas/NCC
non-Coding RNA Deep Learning Classifier
Language: Jupyter Notebook - Size: 50.9 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0
mcrewcow/RGC_Dnmt3a_pONC2d_paper
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Language: R - Size: 84 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 1
zhenghuazx/RNA-LifeTime
RAN-LifeTime is a package for RNA lifetime prediction task written in pytorch. https://arxiv.org/abs/2305.03925
Language: Jupyter Notebook - Size: 5.37 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0
greshbasic/DNA-String-to-Protein-Chain
Program takes in a string of DNA, and converts it to a protein chain.
Language: Python - Size: 40 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0
BGSU-RNA/FR3D
The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
Language: MATLAB - Size: 106 MB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 9 - Forks: 6
Bifrost-Technologies/Lifespark.Genetics
Lifespark Genetics Library is a biomimetic genetic encoder capable of encoding English or Latin text in to genetic code. Great for Games, AI, Security, & more
Language: C# - Size: 275 KB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1
mansikath/DNASequenceTranslator
This repository empowers you to perform operations such as generating complementary sequences, translating DNA to RNA, and identifying open reading frames (ORFs) with ease. Whether you're a bioinformatician, geneticist, or enthusiast, this tool simplifies complex genetic code tasks, making it a valuable resource for genomic research and analysis.
Language: Python - Size: 3.91 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
marcom/PlotRNA.jl
Plot nucleic acid secondary structures with Julia
Language: Julia - Size: 94.7 KB - Last synced: 27 days ago - Pushed: 6 months ago - Stars: 4 - Forks: 1
marcom/LinearFold.jl
Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
Language: Julia - Size: 36.1 KB - Last synced: 15 days ago - Pushed: 3 months ago - Stars: 5 - Forks: 0
sunyumail93/PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
Language: Shell - Size: 107 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 16 - Forks: 1
fncnt/librna-sys
Unsafe low-level Rust bindings for the ViennaRNA package.
Language: C - Size: 59.6 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 2 - Forks: 0
Lattice-Automation/seqfold
nucleic acid folding
Language: Python - Size: 132 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 71 - Forks: 12
BIMSBbioinfo/RCAS
R package for the RNA Centric Annotation System (RCAS)
Language: R - Size: 14.6 MB - Last synced: 22 days ago - Pushed: 4 months ago - Stars: 5 - Forks: 3
emvivas/sarscov2origin
Analysis of the origin of SARS-COV 2, how could this pandemic have started?
Language: HTML - Size: 1.12 MB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
tseemann/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
Language: Perl - Size: 13.3 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 184 - Forks: 41
tsudalab/MCTS-RNA
MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precisely.
Language: Python - Size: 34.2 KB - Last synced: 8 months ago - Pushed: about 7 years ago - Stars: 9 - Forks: 4
persalteas/RNANet
Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.
Language: Python - Size: 3.62 MB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1
persalteas/biorseo
A C++ software interface to RNA module databases, and a biobjective algorithm to include known modules in sequences to assist the energy criteria in predicting secondary structures.
Language: C++ - Size: 22.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
pentalpha/tfbs-studies
Bioinformatics study on tfbs and their association with specific tissues.
Language: Python - Size: 55.7 KB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1
NewcastleUni-NetworkEcologyGroup/Opentrons
A selection of Python scripts for protocols and labware on the Opentrons OT-2
Language: Python - Size: 2.62 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0
mtw/plfoldz
Compute opening energy z scores of RNA
Language: Perl - Size: 5.86 KB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
jaswindersingh2/RNAsnap2
Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network
Language: Perl - Size: 3.91 MB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 8 - Forks: 4
igemsoftware2020/Heidelberg_2020
Github repository for the iGEM Team Heidelberg 2020 judging release software.
Language: Python - Size: 105 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2
HosnaJabbari/CCJ
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
Language: C++ - Size: 1.75 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 1
guifengwei/RNAmpp
RNA metaProfile plot (RNAmpp)
Language: Python - Size: 4.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 3
fomightez/patmatch-binder
Repo for running command line-based PatMatch in Jupyter environment provided via Binder.
Language: Dockerfile - Size: 15.6 MB - Last synced: 8 months ago - Pushed: 10 months ago - Stars: 4 - Forks: 1
fjdf/SpliceTAPyR
Splice-aware Tool for Alignment of Pyrosequencing Reads
Language: C - Size: 189 KB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1
carushi/reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
Language: Python - Size: 1.52 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 4 - Forks: 1
Gu-Lab-RBL-NCI/Lower-stem-secondary-structure
Scripts used for the analysis of the pri-miRNA lower stem structure
Language: R - Size: 586 KB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 2
mmferrari/RNAPlotUtils
Various utilities for the RNAPlot program
Language: Python - Size: 21.5 KB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
mmferrari/ComplSeqUtils
Utility to determine complementary DNA/RNA subsequences
Language: Python - Size: 16.6 KB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
napoleontsai/RNADigestCID
A tool for RNA mass spectrometry
Language: R - Size: 171 KB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
RenneLab/hkref
Hybkit-Ref: Up-to-date Genomic Sequence Reference Database for Hyb
Language: Nextflow - Size: 327 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
jaswindersingh2/SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
Language: Perl - Size: 6.82 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 81 - Forks: 30
bioinformatics-torvergata/BRIO
BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)
Language: HTML - Size: 227 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0
bgruening/galaxy-rna-workbench
Galaxy RNA workbench
Language: HTML - Size: 18 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 37 - Forks: 34
fjossinet/assemble2
Assemble2 allows you to design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera
Language: Java - Size: 30.9 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 4 - Forks: 1
mmagnus/EvoClustRNA
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
Language: Jupyter Notebook - Size: 164 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 14 - Forks: 5
ccozens/astro-mol-bio-tools
Molecular biology tools in React x Typescript on Astro
Language: HTML - Size: 2.26 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
Serio-Programming/Bioinformatics-Exercises
Programs to perform work related to bioinformatics such as counting nucleotides in a DNA string, counting point mutations, and calculating bunny rabbit pairs.
Language: Python - Size: 731 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
bgruening/rbc_docs
RBC de.NBI documents
Size: 96.5 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 4
aakognole/rna-mg-predictor
Prediction of magnesium binding sites in RNA molecules using GCMC/MD (Updated version: https://github.com/mackerell-lab/GCMC_PME)
Language: Shell - Size: 5.51 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1
KirillKryukov/naf
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Language: C - Size: 708 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 47 - Forks: 6
shunliubio/eTAM-seq_workflow
A workflow for eTAM-seq data processing.
Language: R - Size: 21.5 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 4 - Forks: 3
