Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: comparative-genomics

tanghaibao/jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Language: Python - Size: 17.8 MB - Last synced: 4 days ago - Pushed: 6 days ago - Stars: 701 - Forks: 180

merenlab/anvio

An analysis and visualization platform for 'omics data

Language: Python - Size: 715 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 401 - Forks: 138

nextgenusfs/funannotate

Eukaryotic Genome Annotation Pipeline

Language: Python - Size: 32.3 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 290 - Forks: 82

Ensembl/ensembl-compara

The Ensembl Compara Perl API and SQL schema

Language: Perl - Size: 322 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 48 - Forks: 69

eweitz/ideogram

Chromosome visualization for the web

Language: JavaScript - Size: 139 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 277 - Forks: 68

veg/hyphy

HyPhy: Hypothesis testing using Phylogenies

Language: HyPhy - Size: 57.3 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 195 - Forks: 68

thackl/gggenomes

A grammar of graphics for comparative genomics

Language: R - Size: 94.7 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 536 - Forks: 64

moshi4/pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Language: Python - Size: 42.7 MB - Last synced: about 18 hours ago - Pushed: 1 day ago - Stars: 629 - Forks: 36

alipirani88/Comparative_Genomics

Micro 612 genomics workshop

Language: Shell - Size: 42 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 35 - Forks: 32

drostlab/orthologr

Genome wide orthology inference and dNdS estimation

Language: R - Size: 103 MB - Last synced: 2 months ago - Pushed: 7 months ago - Stars: 82 - Forks: 27

labgem/PPanGGOLiN

Build a partitioned pangenome graph from microbial genomes

Language: Python - Size: 131 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 206 - Forks: 25

tanghaibao/quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Language: Python - Size: 2.96 MB - Last synced: 18 days ago - Pushed: over 6 years ago - Stars: 54 - Forks: 21

medvedevgroup/SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs

Language: C++ - Size: 37.3 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 132 - Forks: 19

moshi4/pyGenomeViz

A genome visualization python package for comparative genomics

Language: Python - Size: 67.9 MB - Last synced: about 8 hours ago - Pushed: about 11 hours ago - Stars: 232 - Forks: 19

LyonsLab/coge

CoGe (Comparative Genomics) Platform

Language: Perl - Size: 162 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 44 - Forks: 17

paulstothard/cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

Language: Perl - Size: 693 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 27 - Forks: 17

robinvanderlee/positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

Language: Perl - Size: 169 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 19 - Forks: 16

chadlaing/Panseq

Pan-genomic sequence analysis

Language: HTML - Size: 16.6 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 43 - Forks: 14

gsneha26/SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

Language: C++ - Size: 103 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 45 - Forks: 12

legumeinfo/gcv

Federating genomes with love (and synteny derived from functional annotations)

Language: TypeScript - Size: 13.5 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 30 - Forks: 12

tanghaibao/mcscan ๐Ÿ“ฆ

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Language: C++ - Size: 27.9 MB - Last synced: 7 months ago - Pushed: over 13 years ago - Stars: 21 - Forks: 12

DRL/kinfin

Taxon-aware analysis of clustered protein sequences

Language: Python - Size: 92.3 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 28 - Forks: 12

medvedevgroup/TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes

Language: C++ - Size: 11.6 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 39 - Forks: 10

JLSteenwyk/BioKIT

a versatile toolkit for processing and analyzing diverse types of sequence data

Language: Python - Size: 40.7 MB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 20 - Forks: 9

vaquerizaslab/chess

Comparison of Hi-C Experiments using Structural Similarity.

Language: Python - Size: 241 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 26 - Forks: 7

DessimozLab/FastOMA

FastOMA is a scalable software package to infer orthology relationship.

Language: Python - Size: 977 KB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 19 - Forks: 7

moshi4/ANIclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Language: Python - Size: 96.1 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 43 - Forks: 7

orangeSi/GSSplayground

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

Language: HTML - Size: 148 MB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 27 - Forks: 7

EBI-Metagenomics/notebooks

MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

Language: Jupyter Notebook - Size: 39.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 7

widdowquinn/Teaching-Comp-Genomics-Vis

Comparative Genomics and Visualisation teaching module

Language: Jupyter Notebook - Size: 322 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 7 - Forks: 7

giffordlabcvr/DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

Language: Perl - Size: 49.1 MB - Last synced: about 12 hours ago - Pushed: about 13 hours ago - Stars: 8 - Forks: 6

seqcode/cross-species-domain-adaptation

Codebase for the domain adaptation (cross-species TF binding prediction) project.

Language: Jupyter Notebook - Size: 37.7 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 11 - Forks: 6

almeidasilvaf/syntenet

An R package to infer and analyze synteny networks from protein sequences

Language: R - Size: 75 MB - Last synced: about 23 hours ago - Pushed: about 2 months ago - Stars: 18 - Forks: 6

moshi4/MGCplotter ๐Ÿ“ฆ

Microbial Genome Circular plotting tool for comparative genomics using Circos

Language: Python - Size: 68.1 MB - Last synced: 16 days ago - Pushed: over 1 year ago - Stars: 33 - Forks: 6

khyox/recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Language: Python - Size: 13.3 MB - Last synced: 13 days ago - Pushed: 3 months ago - Stars: 84 - Forks: 6

josuebarrera/GenEra

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Language: Shell - Size: 58.1 MB - Last synced: 2 months ago - Pushed: 6 months ago - Stars: 42 - Forks: 5

moshi4/FastDTLmapper ๐Ÿ“ฆ

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

Language: Python - Size: 38.9 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 12 - Forks: 5

SWittouck/SCARAP

A toolkit for prokaryotic comparative genomics

Language: Python - Size: 218 KB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 23 - Forks: 5

moshi4/COGclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Language: Python - Size: 29.5 MB - Last synced: 11 days ago - Pushed: 6 months ago - Stars: 39 - Forks: 5

JAlvarezJarreta/MEvoLib

Molecular Evolution Library for Python

Language: Python - Size: 1020 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 5

jeffersonfparil/compare_genomes

A comparative genomics workflow using Nextflow, conda, Julia and R

Language: Nextflow - Size: 1.37 MB - Last synced: 25 days ago - Pushed: 26 days ago - Stars: 29 - Forks: 5

univieCUBE/phenotrex Fork of LokiLuciferase/phenotrex

Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

Language: Python - Size: 28.3 MB - Last synced: 6 days ago - Pushed: over 2 years ago - Stars: 8 - Forks: 4

rorycraig337/Chlamydomonas_comparative_genomics

Language: Perl - Size: 7.64 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 4 - Forks: 4

PlantDr430/BuscoOrthoPhylo

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

Language: Python - Size: 43.9 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 15 - Forks: 4

moshi4/plot_genome_align_fig ๐Ÿ“ฆ

Plot genome alignment figure using progressiveMauve & genoPlotR

Language: Python - Size: 37 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 16 - Forks: 4

neurogenomics/orthogene

๐Ÿงฌ o r t h o g e n e ๐Ÿงฌโœจโœจโœจโœจโœจโœจโœจ Interspecies gene mappingโœจโœจโœจโœจโœจ ๐Ÿฆ  ๐Ÿ” ๐ŸŒฑ ๐Ÿ” ๐ŸŒณ ๐Ÿ” ๐ŸŽ ๐Ÿ” ๐ŸŠ ๐Ÿ” ๐Ÿชฑ ๐Ÿ” ๐Ÿชฐ ๐Ÿ” ๐ŸŸ ๐Ÿ” ๐ŸฆŽ ๐Ÿ” ๐Ÿ“ ๐Ÿ” ๐Ÿฆ‡ ๐Ÿ” ๐Ÿ„ ๐Ÿ” ๐Ÿ– ๐Ÿ” ๐Ÿ ๐Ÿ” ๐ŸŽ ๐Ÿ” ๐Ÿˆ ๐Ÿ” ๐Ÿ• ๐Ÿ” ๐Ÿ ๐Ÿ” ๐Ÿ’ ๐Ÿ” ๐Ÿฆง ๐Ÿ” ๐Ÿฆ ๐Ÿ” ๐Ÿƒโ€โ™€๏ธ

Language: R - Size: 7.21 MB - Last synced: 10 days ago - Pushed: 5 months ago - Stars: 35 - Forks: 4

kelkar/Discover_pseudogenes

Discover pseudogenes in a newly assembled genome, using reference gene/protein sequences.

Language: Perl - Size: 8.79 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 1 - Forks: 4

moshi4/GBKviz ๐Ÿ“ฆ

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Language: Python - Size: 5.25 MB - Last synced: 10 days ago - Pushed: almost 2 years ago - Stars: 19 - Forks: 4

CarineRey/caars

CAARS: Comparative Assembly and Annotation of RNA-Seq data

Language: Python - Size: 19.9 MB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 8 - Forks: 4

compbiol/CAMSA

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Language: Python - Size: 6.46 MB - Last synced: about 2 months ago - Pushed: about 4 years ago - Stars: 24 - Forks: 4

extavourlab/Oskar_Evolution

GitHub Repository associated to the study of the evolutionary history and functional inference of the Oskar protein

Language: Turing - Size: 119 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 3

Rowena-h/FusariumLifestyles

Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085

Language: R - Size: 19.4 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 3 - Forks: 3

reslp/funannotate-docker

Docker container for the funannotate genome annotation pipeline

Language: Roff - Size: 39.1 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 3

ma-compbio/Phylo-HMRF

Language: Python - Size: 9.11 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 15 - Forks: 3

Kalan-Lab/zol

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

Language: Python - Size: 82.5 MB - Last synced: about 8 hours ago - Pushed: about 9 hours ago - Stars: 34 - Forks: 3

ohdongha/OrthNet

CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

Language: Python - Size: 176 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 3

jananiravi/compbio-gists

Computational Biology & Bioinformatics Resources

Language: Shell - Size: 36.1 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 11 - Forks: 3

TGuillerme/mulTree

Performs MCMCglmm on multiple phylogenetic trees

Language: R - Size: 7.43 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 12 - Forks: 3

icaromsc/WGCA

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

Language: Python - Size: 629 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 2

seninp-bioinfo/MetaComp

Toolkit for comparative metagenomics in EDGE

Language: R - Size: 17.5 MB - Last synced: 22 days ago - Pushed: almost 6 years ago - Stars: 3 - Forks: 2

mptrsen/mobilome

TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.

Language: Perl - Size: 33.2 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 2

zengxiaofei/busco-tree

A pipeline to construct phylogenetic tree using BUSCOs

Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 2 - Forks: 2

oist/plessy_pairwiseGenomeComparison

Draft workflow for pairwise genome comparison

Language: Nextflow - Size: 825 KB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 4 - Forks: 2

philippmuench/Donut

Donut: automated Circos visualization of multiple fasta files within a docker image

Language: Shell - Size: 141 MB - Last synced: 9 months ago - Pushed: almost 7 years ago - Stars: 9 - Forks: 2

endixk/ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

Language: Java - Size: 41.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 29 - Forks: 2

JRaviLab/jravilab.github.io

Janani Ravi's Research Group

Language: HTML - Size: 420 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 2

jorgenunezsiri/accusyn

AccuSyn: An Accurate Web-based Genome Synteny Browser

Language: JavaScript - Size: 31.8 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 14 - Forks: 2

laelbarlow/amoebae

Workflow for identifying and classifying homologous gene/protein sequences

Language: Python - Size: 7.57 MB - Last synced: 8 months ago - Pushed: 12 months ago - Stars: 16 - Forks: 2

ma-compbio/Phylo-HMGP

Language: Python - Size: 2.66 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

pfenninglab/Zoonomia_Cell-TACIT_fine-mapping

Machine learning models of conserved regulatory elements and human genetics of neuropsychiatric traits

Language: Jupyter Notebook - Size: 1.69 GB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

amnh/PCG

๐™‹๐™๐™ฎ๐™ก๐™ค๐™œ๐™š๐™ฃ๐™š๐™ฉ๐™ž๐™˜ ๐˜พ๐™ค๐™ข๐™ฅ๐™ค๐™ฃ๐™š๐™ฃ๐™ฉ ๐™‚๐™ง๐™–๐™ฅ๐™ โธบ Haskell program and libraries for general phylogenetic graph search

Language: Haskell - Size: 120 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 28 - Forks: 1

KiranJavkar/PRAWNS

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

Language: C++ - Size: 6.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1

odenas/indexed_ms

Fast matching statistics in small space

Language: C++ - Size: 31.3 MB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1

TheJacksonLaboratory/canineglioma

Comparative molecular life history of spontaneous canine and human gliomas. Amin et al. Cancer Cell 2020

Language: HTML - Size: 20.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

clemsciences/alignement_sequence

Code associรฉ ร  un article dans Linux Magazine nยฐ212 fรฉvrier 2018

Language: Python - Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 3 - Forks: 1

docmanny/smRecSearch

Snakemake Implementation of RecSearch featured in "Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk"

Language: HTML - Size: 60.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

SWittouck/lacto_species

Genome-based taxonomy of Lactobacillaceae on the species level

Language: R - Size: 113 MB - Last synced: 12 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

gmagannaDevelop/Genomique-Comparee

Gรฉnomique Comparรฉe (Cours M2 AMI2B Paris-Saclay)

Language: Python - Size: 499 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

LankyCyril/GLOpenAPI

NASA GeneLab Open API

Language: Python - Size: 5.88 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 1

for-giobbe/BASE

Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.

Language: Shell - Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

WandrilleD/pyKleeBarcode

Implements methods and scripts to compute a structure matrix from a multiple sequence alignment. Th

Language: Python - Size: 3.61 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1

almeidasilvaf/cogeqc_paper

Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"

Language: TeX - Size: 79.9 MB - Last synced: 10 days ago - Pushed: 7 months ago - Stars: 1 - Forks: 1

GAMB-GO/IDOPS

"IDOPS IDentification of Pesticidal Proteins", a profile HMM-based tool to detect pesticidal sequences and compare their genetic context

Language: Python - Size: 1.96 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

PlantDr430/CSU_scripts

Scripts created at CSU as a PhD student for genomic annotations and comparisons.

Language: Python - Size: 172 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 1

jananiravi/papers

Size: 42.3 MB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 1

carpentries-incubator/topological-data-analysis

Topological data analysis for Comparative Genomics

Language: Python - Size: 10.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

oist/GenomicBreaks

Pairwise Alignment Breakpoint Analysis

Language: R - Size: 15.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 1

giffordlabcvr/gluetools

An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

Language: Java - Size: 70.8 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 10 - Forks: 1

1KFG/Phylogenomics

Phylogenomics analyses for 1KFG project

Language: Shell - Size: 62.5 KB - Last synced: 2 months ago - Pushed: over 6 years ago - Stars: 6 - Forks: 0

rbr7/compgenomics2021

Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.

Language: AMPL - Size: 48.8 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

giffordlabcvr/Hepadnaviridae-GLUE

A GLUE project for hepadnaviruses

Language: HTML - Size: 36.7 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

alexjschiffer/AutoEmma

Automated Efficient Mixed Model Association Studies - R Package

Language: R - Size: 15.1 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

thekaplanlab/CilioGenics_Analysis

CilioGenics is an integrated method for predicting the ciliary genes

Language: R - Size: 94 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

giffordlabcvr/Flavivirus-GLUE

A GLUE project for comparative genomic analysis of flaviviruses

Language: HTML - Size: 44.5 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

LorenaDerezanin/SOS-FERT_SV_analysis

Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.

Language: Python - Size: 1.65 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

giffordlabcvr/COV-GLUE

A GLUE project for SARS-COV2, focused on genetic variation.

Size: 466 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

satoshikawato/gbdraw

A genome diagram generator for microbes

Language: Python - Size: 50.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

jananiravi/lectures-phylogeny_compgenomics

Supporting material for MMG 801 Lectures 3โ€“5 on 'Phylogeny and Comparative Genomics'

Size: 1.6 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

KargKarg/ComparaisonGenomes

Gรฉnomique comparative entre 3 gรฉnomes d'Enterococcus Cecorum

Language: Python - Size: 9.81 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

gauravcodepro/tairaccession

a python package for working with the tair, phytozome and conversions and also the annotation and coordinates checker.

Language: Python - Size: 36.3 MB - Last synced: 12 days ago - Pushed: 18 days ago - Stars: 1 - Forks: 0

Related Keywords
comparative-genomics 132 bioinformatics 51 genomics 39 evolution 18 microbial-genomics 17 python 15 virus-evolution 14 genome-annotation 12 visualization 12 phylogenetics 10 synteny 10 glue 9 phylogenomics 9 reproducible-research 9 genomics-visualization 9 molecular-evolution 9 sequence-analysis 7 metagenomics 7 r 7 genome-assembly 6 genome-analysis 6 computational-biology 6 open-science 5 paleovirology 5 pangenomics 5 data-oriented-design 5 whole-genome-alignment 4 epidemiology 4 rstats 4 taxonomy 4 biopython 4 docker 4 graph-algorithms 4 circos 4 blast 4 data-oriented-programming 3 microbial-evolution 3 transcriptomics 3 ngs 3 fungi 3 machine-learning 3 bioinformatics-databases 3 microbiology 3 pangenome 3 alignment 3 phylogeny 3 functional-annotation 3 perl 3 hepatitis 3 comparative-analysis 3 genome-sequencing 3 genomic-data-analysis 3 evolutionary-genomics 3 data-visualization 3 evolutionary-biology 3 de-bruijn-graphs 2 antimicrobial-resistance 2 data-oriented 2 bioconductor 2 snps 2 core-genome 2 genbank 2 functional-analysis 2 gff3 2 snp 2 documentation 2 rna-seq 2 bacterial-genomes 2 genome 2 genomes 2 genetics 2 busco 2 codeml 2 bioinformatics-pipeline 2 orthology 2 assembly 2 sequence-alignments 2 javascript 2 science 2 ncbi-submission 2 database 2 ensembl 2 structural-variation 2 orthologs 2 transposable-elements 2 similarity-search 2 convergent-evolution 2 prokaryotic-genomes 2 matplotlib 2 phylogenetic-trees 2 host-pathogen 2 gaussian-process 2 antiviral-resistance 2 blast-searches 2 oskar 2 teaching 2 insects 2 comparative-linguistics 2 orthology-inference 2 retrovirus 2