zaidalrakabi/SeqKernel

String Kernel for comparing protein sequences

Language: C++ - Size: 670 KB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

sbl-sdsc/mmtf-spark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

Language: Java - Size: 1.57 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 22 - Forks: 35

odoluca/Fast-NW-and-SW-Pairwise-alignment-using-numba-JIT

This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

Language: Python - Size: 232 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 2

nanxstats/protrweb

Shiny Web Application for Protein Sequence-Derived Descriptor Computation

Language: HTML - Size: 763 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 3

KChen-lab/TransVar

A multi-way annotator for genetic elements and genetic variations

Language: Python - Size: 5.24 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

iamazeem/ssic

Sequence Similarity and Identity Calculator (DNA + Protein)

Language: Java - Size: 1.86 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 4 - Forks: 0

fomightez/pdbepisa-binder

Using data from PDBePISA with the convenience of Python and Jupyter.

Language: Jupyter Notebook - Size: 2.03 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

fomightez/patmatch-binder

Repo for running command line-based PatMatch in Jupyter environment provided via Binder.

Language: Dockerfile - Size: 15.6 MB - Last synced: 8 months ago - Pushed: 10 months ago - Stars: 4 - Forks: 1

e200/GenesDecypher

A genetic decypher written in C. A school work of a student at Universidade Metodista de Angola.

Language: Roff - Size: 1.2 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 7 - Forks: 1

ba-lab/DEEPCON

DEEPCON: Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout

Language: Perl - Size: 51.5 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 7 - Forks: 5

argonaut0/ProtPlot

ProteinScale v2

Language: CSS - Size: 732 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

Aksh77/Bio-Scraper

Web scraper for UniProt and iPTMnet database

Language: Python - Size: 201 KB - Last synced: 8 months ago - Pushed: almost 6 years ago - Stars: 9 - Forks: 0

eliberis/parapred

Paratope Prediction using Deep Learning

Language: Python - Size: 8.03 MB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 57 - Forks: 15

fanchi/DFLpred

High-throughput prediction of disordered flexible linker regions in proteins

Language: Java - Size: 271 KB - Last synced: 8 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

thrakar9/CoMET

Learning hierarchical motif representations for proteins.

Language: Python - Size: 6.99 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 6 - Forks: 2

miguelamezola/CAFA

Computer science capstone project.

Language: Java - Size: 146 MB - Last synced: 8 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

ronakvijay/Protein_Sequence_Classification

A case study on Pfam dataset to classify protein families.

Language: Jupyter Notebook - Size: 1.07 MB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 24 - Forks: 15

UhrigLab/DomainViz

This repo is for the creation of a webpage that will hold multiple tools to create a one-stop-shop for accessing the tools created by the UhrigLab and others.

Language: HTML - Size: 58.8 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 2

paulstothard/sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Size: 1.02 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 48 - Forks: 22

sagnikbanerjee15/Finder

A fully automated gene annotator from RNA-Seq expression data

Language: Python - Size: 247 MB - Last synced: 8 months ago - Pushed: 12 months ago - Stars: 50 - Forks: 14

cobilab/ac2

An efficient amino acid sequence compressor using Neural Networks

Language: C - Size: 160 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 3

Rinoahu/SwiftOrtho

A high performance tool to identify orthologs and paralogs across genomes.

Language: Python - Size: 20.1 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 22 - Forks: 12

laelbarlow/jackhmmerer

A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.

Language: Python - Size: 235 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

opencog/agi-bio

Genomic and Proteomic data exploration and pattern mining

Language: Scheme - Size: 150 MB - Last synced: 9 days ago - Pushed: almost 2 years ago - Stars: 24 - Forks: 30

slgero/taxid2prot

Allow you to ownload all UniProt sequences for a given organism's Tax Id in FASTA format from https://www.uniprot.org/

Language: Python - Size: 13.7 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

BoHuangLab/Protein-Localization-Transformer

Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction

Language: Python - Size: 10.2 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 22 - Forks: 1

MPI-Dortmund/pymissense

PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.

Language: Python - Size: 1010 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 9 - Forks: 0

Alejandro2195/Multiple-File-Protein-prediction-in-AlphaFold2-ColabFold

The provided code snippet forms a critical component of an automated script aimed at facilitating the prediction of protein structures using the AlphaFold model within a Google Colab environment. The script is tailored to handle the simultaneous upload of multiple input files, each containing multiple protein sequences for prediction.

Language: Jupyter Notebook - Size: 5.26 MB - Last synced: 5 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

adrien-lagesse/enzyme-stability

Code for the Novozymes Kaggle competition.

Language: Jupyter Notebook - Size: 14.2 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dohlee/tranception-pytorch

Implementation of Tranception, a SOTA transformer model for protein fitness prediction, in PyTorch.

Language: Jupyter Notebook - Size: 166 KB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

ghanmi-hamza/Protein_Sequence_Classification

Classify Protein using only its amino acid sequence

Language: Jupyter Notebook - Size: 82 KB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

rrouz/MonoPhyASRP

MonoPhyASRP: A pipeline for phylogenetic tree construction, and ancestral sequence approximation.

Language: Python - Size: 151 KB - Last synced: 5 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

MikolajMydel/msc-2022

App for analysing genetic code

Language: TypeScript - Size: 1.86 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0

ljvmiranda921/gym-lattice

An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem

Language: Python - Size: 286 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 52 - Forks: 8

Mohamed-Nser-Said/ffp

FASTA file processor is a CMake Project written in modern C++ and designed to take advantage of the new C++17 standard. It is designed to read and write FASTA files quickly and efficiently, and it can be used as a library or a stand-alone program. The project comes with a set of tests using the Catch2 framework.

Language: C++ - Size: 272 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Genentech/walk-jump

Official repository for discrete Walk-Jump Sampling (dWJS)

Language: Python - Size: 184 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 19 - Forks: 2

MG-RAST/myM5NR

M5NRv2 -- non-redundant protein and rRNA database integration

Language: Perl - Size: 10.8 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 3

honig-lab/ZEPPI

A method designed for proteome-scale sequence-based evaluation of protein-protein interfaces as defined by structural models of protein-protein interaction complexes.

Language: Python - Size: 4.09 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

debbiemarkslab/variational-synthesis

Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).

Language: Python - Size: 23.6 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 14 - Forks: 6

alchemab/parapred-pytorch

PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)

Language: Python - Size: 2.34 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 14 - Forks: 1

jendelel/calc_protein_conservation

This script computes conservation score per aminoacid for a protein.

Language: Perl - Size: 23.4 KB - Last synced: 5 months ago - Pushed: about 6 years ago - Stars: 5 - Forks: 4

Magnushhoie/basic_fasta_scripts

Biopython scripts for sorting, splitting, processing FASTA sequences

Language: Python - Size: 8.79 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

Old-Shatterhand/ESM-Explainability Fork of hila-chefer/Transformer-Explainability

Adaptation of the official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks [CVPR 2021] to ESM.

Size: 3.82 MB - Last synced: 5 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

ostrokach/uniparc_xml_parser

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

Language: Rust - Size: 31.1 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

lonnie-nguyen/pratt_data_analysis

Analysis of variable amino acid frequencies from Pratt sequence data

Language: Jupyter Notebook - Size: 49.6 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

tbepler/prose

Multi-task and masked language model-based protein sequence embedding models.

Language: Python - Size: 227 KB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 82 - Forks: 20

cspinetta/bio-tp

TP Bioinformatica - UTN FRBA

Language: Scala - Size: 14.2 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

Multiomics-Analytics-Group/course_protein_language_modeling

Language: Jupyter Notebook - Size: 34.5 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

miroslavkurka/wkplugin

A PyMol plugin for calculating Wu-Kabat Variability and displaying it on the pdb model

Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

Mmark94/protein_recoding

This is a set of simple python scripts to recode protein. This script can be used change codons in DNA of protein sequence.

Language: Python - Size: 11.7 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 2 - Forks: 0

fomightez/pdbsum-binder

Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org

Language: Jupyter Notebook - Size: 563 KB - Last synced: 11 months ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

joelb123/rafm Fork of unmtransinfo/rafm

Reliable AlphaFold Measures

Language: Python - Size: 1.53 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

yeastpro/ExpressYeaself

An open source predictive model of protein expression in yeast, written in Python.

Language: Jupyter Notebook - Size: 170 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

kchu25/SeqShuffle.jl

Shuffle the string sequences such that the k-mer frequency is preserved in each string

Language: Julia - Size: 231 KB - Last synced: 3 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 0

kad-ecoli/python_scripts

scripts for parsing PDB, fasta, and GO

Language: Python - Size: 159 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 13 - Forks: 12

intelsp/VELA

Origin of LIFE Research Project.

Size: 16.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

MuthusaravananS/phylogeny-tree-with-MSA-and-Domain

The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.

Language: Python - Size: 27.3 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ShahidIqb/PROST

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.

Language: Python - Size: 279 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 17 - Forks: 2

edouzery/BASH_scripts_for_FASTA_files

BASH scripts to extract information from FASTA files.

Language: Shell - Size: 28.3 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

andreasprlic/proteinfeatureview

The Protein Feature View - a SVG library for visualising protein annotations

Language: JavaScript - Size: 4.57 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 11 - Forks: 11

smilida/ProteinPipe

ProteinPipe: protein sequences classification model

Language: Java - Size: 33 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

slowikj/seqR

fast and comprehensive k-mer counting package

Language: C++ - Size: 1.72 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 14 - Forks: 1

JacobHanimann/IsoAligner

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

Language: Python - Size: 215 MB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 2

sinc-lab/Comparison-of-Protein-learning

Comparison of protein learning

Language: Jupyter Notebook - Size: 17.7 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

debbiemarkslab/EVzoom

Visually explore covariation in protein families

Language: JavaScript - Size: 341 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 34 - Forks: 5

allydunham/aa_subtypes

Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape

Language: R - Size: 24.6 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 9 - Forks: 1

frl21/Phosphorylation_Prediction

This project is conduct research using deep learning to predict phosphorylation site in protein sequences

Language: Jupyter Notebook - Size: 65.6 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 4 - Forks: 1

olsonjac/dna_rna_aa.py

DNA sequence Transcription and Translation tool

Language: Python - Size: 39.1 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

tdseher/simple-codon-optimizer

Simple Python program to perform codon optimization or heterology calculations.

Language: Python - Size: 31.3 KB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 7 - Forks: 2

eugene/prot-bo-0

:pill: Guiding directed protein evolution with Bayesian Optimization - First Steps :pill:

Language: Python - Size: 3.14 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 16 - Forks: 0

gkoulouras/seq-sec-ratio

A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

Language: Visual Basic - Size: 812 KB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0

vam-sin/CATHe

Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH superfamilies

Language: Python - Size: 63.5 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 1

PaulaRS/run-multi-InterProScan

Runs multiple protein sequences in InterProScan remotely

Language: Python - Size: 29.3 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

chanana/gnkg 📦

App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.

Language: Python - Size: 1.88 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

alescrnjar/AminoX

NLP Recurrent Neural Network for missing aminoacid determination

Language: Python - Size: 262 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

cx0/llm-for-clinical-variants

Data repository for NeurIPS 2022 LMRL workshop paper.

Language: Jupyter Notebook - Size: 17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Sahar-DataScience/Protein-Location-Prediction

identify the location of a protein within a cell using only its amino acid sequence

Language: Jupyter Notebook - Size: 133 KB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

kaledhoshme123/Using-Deep-Learning-to-Annotate-the-Protein-Universe

Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.

Language: Jupyter Notebook - Size: 595 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

WeiChengTseng/Basic_Peptides_Model

Language: Python - Size: 6.84 KB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 4 - Forks: 0

antmaxi/BSc_thesis

MIPT 2019 Bachelor's project "Pipeline for search of off-target ligand connections"

Language: Jupyter Notebook - Size: 18.9 MB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

althonos/proteinogenic

Chemical structure generation for protein sequences as SMILES string.

Language: Rust - Size: 418 KB - Last synced: about 15 hours ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

AndroidSim/Bioinformatics

A collection of projects in bioinformatics.

Language: C - Size: 5.43 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

naailkhan28/esm_interpretability Fork of facebookresearch/esm

Adding interpretability features to Facebook AI Research's ESM-IF Inverse Folding Model

Language: Python - Size: 10.9 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

FAhtisham/Protein-Crotonylation

The repository contains the codes to predict protein crotonylation, existing methods like DEEPKCR and performance values of existing approaches also have been provided here.

Size: 1.27 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

mircare/Brewery

State-of-the-art ab initio prediction of 1D protein structure annotations

Language: C++ - Size: 18 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 14 - Forks: 3

SoliareofAstora/portfolio-Metagenomic-DeepFRI

Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. This repository is for portfolio purposes only. For currently maintained version go to Małopolskie Centrum Biotechnologii repository - https://github.com/bioinf-mcb/Metagenomic-DeepFRI

Language: Python - Size: 736 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

adeptatom/DNA-Converter

A native Windows application that allows for the conversion of DNA to RNA and its respective proteins. Despite being created on and for Windows, the application has been styled after the GUI found on MacOS. The executable is now downloadable. The current release is v1.0.0.

Language: Python - Size: 35.3 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

ArnaudFickinger/DeepSequence-PyTorch

PyTorch Implementation of DeepSequence

Language: Python - Size: 1.19 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 10 - Forks: 3

TiagoCoelhoFCUP/Bioinformatics

Projects developed under the Bioinformatics college chair during the 2020/2021 school year

Language: Python - Size: 1.06 MB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

haddad-github/DNA-Translator-WebApp

Web app (using Flask) that translates a DNA sequence into mRNA and protein sequence

Language: Python - Size: 15.6 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

yaan-jang/leri

Leri Analytics delivers bioinformatics services for and solutions to both the academic labs and industries.

Size: 285 KB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

cbalbin-bio/Submatch-BLAST-Parser

Parse consecutive matches in BLAST results.

Language: Python - Size: 7.81 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

ChongLC/UNIQmin_PublicationData

This repository is to store the used dataset for publications related to UNIQmin

Size: 164 MB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

zeeshanalipanhwar/Monti-Carlo-Simulations-of-2D-HP-Model

The goal is to minimize the energy of HP-sequences, represented using 2D HP-Model, using the Monti Carlo Simulations techinque.

Language: Jupyter Notebook - Size: 1.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

shivChitinous/seq-al

aligning DNA and protein sequences using dynamic programming

Language: Jupyter Notebook - Size: 2.46 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

laurendelong21/DBInspector

A tool to compare protein sequences across UniProt and NCBI RefSeq

Language: Python - Size: 1.21 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

vvrahul11/BioJotter

BioJotter: A tool for DNA/RNA/Protein sequence and structure analysis

Language: Perl - Size: 8.05 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

abufarhad/Thesis

For my thesis purpose

Language: Jupyter Notebook - Size: 12.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

fomightez/hhsuite3-binder

Repo for running command line-based HH-suite3 software in Jupyter environment provided via Binder.

Language: Jupyter Notebook - Size: 884 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

rbyirdaw/mesmer

A tool to visualize 1-D versus 3-D pair-wise residue distances of a protein structure.

Language: JavaScript - Size: 1.5 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0