ilwookkim/cgNetwork

Gene co-expression network analysis

Language: R - Size: 2.7 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

MartheLaisne/TCGA_Adam12_IkrameProject

Projet Ikrame : Nanostring, Activation du gène TSPS ADAM12 par TAK1 et KAT2A

Size: 19.3 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

FNL-MoCha/nextgenseq_pipeline

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Language: Python - Size: 52.7 MB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 18 - Forks: 7

raymondkiu/R-scripts-graphing-statistics

My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

Language: R - Size: 794 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 5 - Forks: 2

ReemaSingh/Transcriptomics-Assembly

De-novo Transcriptomics Assembly workflow for four Dictyostelium species (e.g.- Dictyostelium discoideum, Polysphondylium pallidum, Dictyostelium Lacteum and Dictyostelium Fasciculatum). This is the standard assembly workflow that should ideally work on any organism.Before normalizing first concatenate all RNAseq data across all samples into a single set of inputs to generate a single reference transcriptomics assembly. Combine all left reads in one file and all right reads in another file. In order to reduce the number, raw reads were normalized using in silico digital normalization implemented in trinity at 50X coverage. The reads were assembled with Trinity using kmer parameter of 25.

Language: Perl - Size: 26.4 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

aprezvykh/bioinformatics

some scripts to process transcriptomics and Chip-seq data

Language: R - Size: 183 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

zglu/ivis

IVIS is a chart editor for interactive visualisation, based on jQuery and HighCharts. Chart types include dot/scatter, 2D scatter, line, bar/column, pie, and heat map. It's powerful when analysing large data sets.

Language: JavaScript - Size: 1.3 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 6 - Forks: 1

ncbi/pm4ngs

Project Manager for NGS data analysis

Language: Python - Size: 14 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 25 - Forks: 10

SharuPaul/RNASeq

NextFlow dsl2 pipeline for RNASeq analysis

Language: Nextflow - Size: 16.6 KB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

arcones/kilombo

Automate NIH search & aggregation

Language: Python - Size: 481 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

AwesomeTimeTraveler/IntegrativeMultiOM

IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context

Language: R - Size: 1.37 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

patidarr/ngs_pipeline

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Language: Python - Size: 46.6 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 43 - Forks: 19

noucel/RNAseq-DGE

RNA-seq Differential Gene Expression (DGE) analysis comparing multiple dataset samples involves the comparison of gene expression levels across multiple samples with the possibliity to account for defined conditions, treatments, or groups.

Language: R - Size: 2.59 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

FrietzeLabUVM/TAP

Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.

Language: Shell - Size: 2.49 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

dmgatti/GBRS_Tutorial

Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.

Language: Shell - Size: 2.96 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

qbic-pipelines/rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

Language: Nextflow - Size: 62.6 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 32 - Forks: 20

SherineAwad/RNASeqVariantCalling

GATK variant calling for RNASeq

Language: Python - Size: 6.84 KB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

collaborativebioinformatics/isocomp

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

Language: HTML - Size: 49 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 8

CirculatoryHealth/CHARGE_1000G_CAC

CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

Language: HTML - Size: 931 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

leekgroup/recount-website

Code for the Recount project

Language: R - Size: 95.4 MB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 12 - Forks: 5

leahkemp/rna_analysis_template

Analysis template for analysing Illumina RNAseq data.

Language: HTML - Size: 60.7 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

jessmhoehner/Methods Fork of EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

BIMSBbioinfo/pigx

Pipelines in genomics

Language: HTML - Size: 182 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 18 - Forks: 5

auroramaurizio/SurfR

An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data

Language: R - Size: 6.6 MB - Last synced: about 5 hours ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

LieberInstitute/recount-brain

Code and analyses for the recount-brain project

Language: HTML - Size: 120 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 2

COV-IRT/kf-rnaseq-workflow Fork of kids-first/kf-rnaseq-workflow

:microscope: RNA-Seq workflow for Kids-First DRC

Size: 197 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

COV-IRT/d3b-dev-rnaseq-snv Fork of d3b-center/d3b-dev-rnaseq-snv

RNAseq SNV Calling Workflow (beta)

Language: Common Workflow Language - Size: 207 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

Amit-H/stave

Bulk to Single Cell Type Estimation

Language: R - Size: 24.6 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

MahShaaban/Rfastqc 📦

An R package to parse and manage text output of the sequencing quality control utility (fastQC)

Language: R - Size: 73.2 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

jyu-theartofml/RNA_seq_diff_expression

Differential expression analysis in R for RNA sequence reads of fission yeast.

Language: R - Size: 515 KB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

svsuresh/tuxedo2_snakemake

Language: R - Size: 186 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

nextflow-io/rnatoy 📦

A proof of concept RNA-Seq pipeline with Nextflow

Language: Nextflow - Size: 799 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 32 - Forks: 45

yyoshiaki/VIRTUS

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Language: Common Workflow Language - Size: 9.62 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 32 - Forks: 8

helenepolveche/splicinglore_website

A web resource for studying the regulation of cassette exons by human splicing factors

Language: PHP - Size: 2.11 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

cmatKhan/llfsRnaseq

An R package which stores the code used to process Long Life Family Study RNA sequencing from fastq to analysis releases

Language: R - Size: 5.95 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

niqolla/ieo_RNAseq_project

eproduciton of a publication regarding gene expression in different phases of lactation in humans

Language: TeX - Size: 22.6 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

jzhangc/git_RBioArray

Simple to use package for OMICS data analysis (featuring limma, WGCNA, GSEA)

Language: R - Size: 42.7 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 1 - Forks: 0

Tuteja-Lab/TissueEnrich

R package for tissue-specific gene enrichment

Language: R - Size: 57.3 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

sivkri/rna-Seq-ScaledLengthTPM

To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.

Language: R - Size: 4.88 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

kiranfranklin999/Nextflow_tutorials

Introduction to Bioinformatics workflows with Nextflow

Language: Nextflow - Size: 3.57 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

kfarleigh/ResearchersGuideToPopulationGenomics

A book that discusses topics and contains tutorials relevant to population genomics

Language: HTML - Size: 1.29 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

liuwell/rapvis

A tool for RNAseq processing and visualization

Language: Python - Size: 19.1 MB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

NCI-RBL/4SUseq

Analysis of 4SU labeled (and unlabeled) total RNA samples.

Language: Python - Size: 11.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

milescsmith/rnaseq_targets_pipeline

An R {targets}-based pipeline for processing and generating reports for RNAseq data

Language: R - Size: 97.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

jnoms/SV40_transcriptome

Toolkit and pipeline for processing short- and long-read RNA sequencing data.

Language: Jupyter Notebook - Size: 4.36 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

macmanes-lab/Oyster_River_Protocol

Official Repository of the Oyster River Protocol for Transcriptome Assembly

Language: TeX - Size: 58 MB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 16 - Forks: 13

LieberInstitute/libd_stem_timecourse

Language: HTML - Size: 12.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 4 - Forks: 0

LieberInstitute/SPEAQeasy-example

Full length example for SPEAQeasy

Language: Shell - Size: 49.6 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

CompBioLevings/snATAC-and-scRNA-seq-plots

This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specifically, in this code, I identify differences in neuronal vs other cell types in the mouse brain based on chromatin accessibility (snATAC-seq signal of a specific region aggregated by cell type/cluster) and gene expression (scRNA-seq signal aggregated by cell type/cluster).

Language: Jupyter Notebook - Size: 15.9 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

LieberInstitute/SPEAQeasy

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Language: HTML - Size: 770 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 5

massiddamt/rna_vc_docker

A Snakemake pipeline for RNA Seq Variant Calling

Language: Python - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

aristoteleo/Scribe-py

Regulatory networks with Direct Information in python

Language: Python - Size: 242 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 36 - Forks: 6

TraxlerLab/RNAseq_2021Pyonema

Code associated with Fischer, et al (2021) "Pyrolyzed Substrates Induce Aromatic Compound Metabolism in the Post-fire Fungus, Pyronema domesticum"

Size: 7.81 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

invertome/crustome

CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.

Language: Shell - Size: 3.56 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

crazyhottommy/pyflow-RNAseq

RNAseq pipeline based on snakemake

Language: Python - Size: 106 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 15 - Forks: 6

fpozoc/qsplice

Quantifying splice junctions coverage from data released by STAR and mapping it to genome positions.

Language: Python - Size: 236 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

ajitjohnson/arseq

An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)

Language: R - Size: 9.43 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 8 - Forks: 2

mjsteinbaugh/eggan-es_derived_motor_neuron_knockdown-rnaseq-human 📦

ALS implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair

Language: HTML - Size: 5.93 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

stracquadaniolab/quick-rnaseq-nf

A basic and quick workflow for differential expression analysis

Language: Nextflow - Size: 5.92 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

safisher/ornaseq

Ontology of RNA Sequencing

Language: Makefile - Size: 118 KB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 2

bioinfo-dirty-jobs/NGSBASE

Tutorial test

Language: HTML - Size: 4.47 MB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 1

bcm-uga/penda

PenDA is a rank-based method for personalized differential analysis.

Language: R - Size: 7.84 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 7 - Forks: 5

mikelove/deseq2_or_edger

DESeq2 or edgeR

Language: R - Size: 513 KB - Last synced: 26 days ago - Pushed: over 7 years ago - Stars: 22 - Forks: 8

LieberInstitute/recount3-docs

Documentation for all things related to `recount3`

Language: R - Size: 29.6 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

baliga-lab/Global_Search

Code repository for the Coral Global Search project.

Language: Python - Size: 26.3 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

CodeInTheSkies/Th17-Cell-Pathogenicity-Data

Code accompanying the paper titled "Cholinergic control of Th17 cell pathogenicity in experimental autoimmune encephalomyelitis"

Language: R - Size: 28.9 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

stemangiola/ppcseq

Probabilistic outlier identification for bulk RNA sequencing data

Language: R - Size: 153 MB - Last synced: 6 months ago - Pushed: 9 months ago - Stars: 6 - Forks: 3

niaid/NGS_Intro

An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.

Language: Python - Size: 6.94 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 3

thachnguyen/duesselpore

This is a local webserver for RNASeq Analysis

Language: Python - Size: 20 MB - Last synced: 5 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 0

niaid/single-cell-RNA-seq

A general introduction for biologists on scRNAseq, with a focus on the difference from bulk RNA-seq

Language: Jupyter Notebook - Size: 57.1 MB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 2

niaid/RNASeqQC_Alignment

Introductory practical training

Language: HTML - Size: 3.19 MB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 3

LieberInstitute/recount.bwtool

Fast coverage matrices from recount data using bwtool

Language: R - Size: 68.4 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

mikelove/Bioc2022AllelicExpression

Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish

Language: R - Size: 46.1 MB - Last synced: 26 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

CompBioLevings/MCF7-ROS-RNAseq Fork of levin252/MCF7-ROS-RNAseq

This is a script I used to make an R Shiny application that allows for browsing the time-course gene expression signal, and associated statistics, for an experiment where MCF-7 cells were exposed to oxidative stress-inducing compounds. This dataset was published in *Free Radical Biology and Medicine*, article found here https://doi.org/10.1016/j.freeradbiomed.2021.05.016.

Language: R - Size: 19.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

BIGslu/2022_ASM_Microbe_RNAseq

Language: HTML - Size: 52.4 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

zifornd/rnaseq

A workflow for RNA-seq analysis

Language: Python - Size: 111 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

XPRESSyourself/XPRESSplot

A toolkit for navigating and analyzing gene expression datasets

Language: Python - Size: 90.1 MB - Last synced: 13 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

denalitherapeutics/archs4

An R interface to query and extract data from the ARCHS4 data

Language: R - Size: 351 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 10 - Forks: 1

hernanmd/edgeR.EnhancedVolcanoPlot

Enhanced volcano plot using edgeR data

Language: R - Size: 1.95 KB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

ptdolan/RNAseq_pipe

RNAseq pipeline examples

Language: Shell - Size: 86.8 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

renatopuga/rnaseq-chr22

RNAseq STAR pipeplien chr22

Language: Jupyter Notebook - Size: 39.1 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 5

milescsmith/rnaseq_pipeline

Snakemake+singularity RNAseq processing pipeline

Language: Python - Size: 831 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

lakhanp1/omics_utils

util scripts for various omics data analysis

Language: R - Size: 81 MB - Last synced: 3 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 6

TeamMacLean/atacr

Analysing Capture Seq Count Data

Language: R - Size: 56.2 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 14 - Forks: 0

PavlidisLab/rnaseq-variant-pipeline

Pipeline for calling and analyzing variants from RNA-Seq data

Language: Python - Size: 15.6 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

evolomics-group/rna-seq-pipeline

In development scripts for EvolOMICs group's NGS Data Analysis Pipeline

Language: Shell - Size: 3.48 MB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0

pentalpha/luthien

Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.

Language: C++ - Size: 354 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

nextflow-io/rnaseq-encode-nf Fork of fstrozzi/rnaseq-encode-nf

An example RNA-seq pipeline with Nextflow and using public ENCODE data

Language: HTML - Size: 2.88 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 10 - Forks: 1

LieberInstitute/qsva_brain

qSVA adapted for 2 brain regions as part of the BrainSeq Phase II project

Language: HTML - Size: 381 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

leekgroup/regionReport

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Language: R - Size: 66.1 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 9 - Forks: 4

bioinformatics-core-shared-training/RNAseq_March_2019

RNAseq Data Analysis Course, Cambridge University Bioinformatics Training Facility, March 2019

Language: HTML - Size: 140 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 10 - Forks: 2

bixBeta/TReX

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex

Language: Shell - Size: 1.06 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 1

vivekbhr/scRIApipe

single-cell RNA Isoform Analysis Pipeline

Language: Python - Size: 4.85 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

asusete/askoR Fork of askomics/askoR

AskoR pipeline: analysis of gene expression data, using edgeR.

Language: R - Size: 34 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

osagiei/pfv2

Circular RNA identification

Language: Java - Size: 2.74 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

villegar/RuNAs

RNA-seq pipeline

Language: Python - Size: 19.4 MB - Last synced: 27 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

NCBI-Hackathons/ExpressiVar

Language: Python - Size: 6.02 MB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Language: Shell - Size: 418 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

villabioinfo/txGeneNetwork

Workflow for Transcript, Gene, and Gene Set network analysis 🧬📊✨

Language: HTML - Size: 3.76 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

stajichlab/RNASeq_template

Template for RNASeq analyses running on HPCC

Language: R - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 3