Ensembl/ensembl-compara

The Ensembl Compara Perl API and SQL schema

Language: Perl - Size: 322 MB - Last synced: about 11 hours ago - Pushed: about 18 hours ago - Stars: 48 - Forks: 69

giffordlabcvr/DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

Language: Perl - Size: 49.1 MB - Last synced: about 12 hours ago - Pushed: about 21 hours ago - Stars: 8 - Forks: 6

Rowena-h/GaeumannomycesGenomics

Scripts for Hill et al. (in review) 🌾

Language: R - Size: 3.12 MB - Last synced: about 21 hours ago - Pushed: about 22 hours ago - Stars: 2 - Forks: 0

oist/plessy_pairwiseGenomeComparison

Draft workflow for pairwise genome comparison

Language: Nextflow - Size: 825 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 4 - Forks: 2

Kalan-Lab/zol

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

Language: Python - Size: 82.5 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 34 - Forks: 3

DessimozLab/FastOMA

FastOMA is a scalable software package to infer orthology relationship.

Language: Python - Size: 977 KB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 19 - Forks: 7

tanghaibao/jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Language: Python - Size: 17.8 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 701 - Forks: 180

ch1ru/genome-lab

A bioinformatics web app for comparative genomics

Language: TypeScript - Size: 369 KB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

veg/hyphy

HyPhy: Hypothesis testing using Phylogenies

Language: HyPhy - Size: 57.3 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 195 - Forks: 68

SWittouck/SCARAP

A toolkit for prokaryotic comparative genomics

Language: Python - Size: 218 KB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 23 - Forks: 5

gauravcodepro/tairaccession

a python package for working with the tair, phytozome and conversions and also the annotation and coordinates checker.

Language: Python - Size: 36.3 MB - Last synced: 10 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0

giffordlabcvr/Parvovirus-GLUE

A GLUE project for comparative genomic analysis of parvoviruses

Language: JavaScript - Size: 49.1 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 1 - Forks: 0

DRL/kinfin

Taxon-aware analysis of clustered protein sequences

Language: Python - Size: 92.3 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 28 - Forks: 12

jeffersonfparil/compare_genomes

A comparative genomics workflow using Nextflow, conda, Julia and R

Language: Nextflow - Size: 1.37 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 29 - Forks: 5

salvadorlab/mbovpan

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

Language: Nextflow - Size: 389 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 4 - Forks: 0

merenlab/anvio

An analysis and visualization platform for 'omics data

Language: Python - Size: 715 MB - Last synced: 30 days ago - Pushed: about 1 month ago - Stars: 401 - Forks: 138

carpentries-incubator/topological-data-analysis

Topological data analysis for Comparative Genomics

Language: Python - Size: 10.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

labgem/PPanGGOLiN

Build a partitioned pangenome graph from microbial genomes

Language: Python - Size: 131 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 206 - Forks: 25

EBI-Metagenomics/notebooks

MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

Language: Jupyter Notebook - Size: 39.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 7

BioModelLab/A.rufa_genome

De novo assembly of the red legged patridge (Alectoris rufa) genome

Language: Jupyter Notebook - Size: 52.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

WandrilleD/pyKleeBarcode

Implements methods and scripts to compute a structure matrix from a multiple sequence alignment. Th

Language: Python - Size: 3.61 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1

nextgenusfs/funannotate

Eukaryotic Genome Annotation Pipeline

Language: Python - Size: 32.3 MB - Last synced: 12 days ago - Pushed: about 1 month ago - Stars: 290 - Forks: 82

JAlvarezJarreta/MEvoLib

Molecular Evolution Library for Python

Language: Python - Size: 1020 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 5

moshi4/pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Language: Python - Size: 50.5 MB - Last synced: 3 days ago - Pushed: about 1 month ago - Stars: 625 - Forks: 36

Jtrachsel/pdtools

Functions for working with NCBI's Pathogen Detection data

Language: R - Size: 6.51 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

paulstothard/cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

Language: Perl - Size: 693 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 27 - Forks: 17

oist/GenomicBreaks

Pairwise Alignment Breakpoint Analysis

Language: R - Size: 15.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 1

almeidasilvaf/syntenet

An R package to infer and analyze synteny networks from protein sequences

Language: R - Size: 75 MB - Last synced: 1 day ago - Pushed: about 2 months ago - Stars: 18 - Forks: 6

almeidasilvaf/doubletrouble

An R package to identify and classify duplicated genes from whole-genome protein sequence data

Language: R - Size: 15.8 MB - Last synced: 8 days ago - Pushed: about 2 months ago - Stars: 8 - Forks: 0

giffordlabcvr/gluetools

An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

Language: Java - Size: 70.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 1

thackl/gggenomes

A grammar of graphics for comparative genomics

Language: R - Size: 94.7 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 536 - Forks: 64

satoshikawato/gbdraw

A genome diagram generator for microbes

Language: Python - Size: 50.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

khyox/recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Language: Python - Size: 13.3 MB - Last synced: 11 days ago - Pushed: 3 months ago - Stars: 84 - Forks: 6

endixk/ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

Language: Java - Size: 41.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 29 - Forks: 2

giffordlabcvr/Filovirus-GLUE

A GLUE project for comparative genomic analysis of filoviruses

Language: HTML - Size: 10.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

TGuillerme/mulTree

Performs MCMCglmm on multiple phylogenetic trees

Language: R - Size: 7.43 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 12 - Forks: 3

giffordlabcvr/Lentivirus-GLUE

A GLUE project for Lentiviruses (genus Lentivirus)

Language: JavaScript - Size: 44.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

eweitz/ideogram

Chromosome visualization for the web

Language: JavaScript - Size: 139 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 277 - Forks: 68

almeidasilvaf/cogeqc

An R package to perform systematic quality checks on comparative genomics analyses

Language: R - Size: 9.46 MB - Last synced: 8 days ago - Pushed: 4 months ago - Stars: 8 - Forks: 0

JRaviLab/jravilab.github.io

Janani Ravi's Research Group

Language: HTML - Size: 420 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 2

jananiravi/papers

Size: 42.3 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

JLSteenwyk/BioKIT

a versatile toolkit for processing and analyzing diverse types of sequence data

Language: Python - Size: 40.7 MB - Last synced: 19 days ago - Pushed: 4 months ago - Stars: 20 - Forks: 9

neurogenomics/orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Language: R - Size: 7.21 MB - Last synced: 8 days ago - Pushed: 5 months ago - Stars: 35 - Forks: 4

josuebarrera/GenEra

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Language: Shell - Size: 58.1 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 42 - Forks: 5

giffordlabcvr/Flavivirus-GLUE

A GLUE project for comparative genomic analysis of flaviviruses

Language: HTML - Size: 44.5 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

giffordlabcvr/Hepadnaviridae-GLUE

A GLUE project for hepadnaviruses

Language: HTML - Size: 36.7 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

thekaplanlab/CilioGenics_Analysis

CilioGenics is an integrated method for predicting the ciliary genes

Language: R - Size: 94 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

KargKarg/ComparaisonGenomes

Génomique comparative entre 3 génomes d'Enterococcus Cecorum

Language: Python - Size: 9.81 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

moshi4/ANIclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Language: Python - Size: 96.1 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 43 - Forks: 7

moshi4/COGclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Language: Python - Size: 29.5 MB - Last synced: 8 days ago - Pushed: 6 months ago - Stars: 39 - Forks: 5

moshi4/pyGenomeViz

A genome visualization python package for comparative genomics

Language: Python - Size: 47.8 MB - Last synced: 1 day ago - Pushed: 7 months ago - Stars: 231 - Forks: 19

almeidasilvaf/cogeqc_paper

Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"

Language: TeX - Size: 79.9 MB - Last synced: 8 days ago - Pushed: 7 months ago - Stars: 1 - Forks: 1

drostlab/orthologr

Genome wide orthology inference and dNdS estimation

Language: R - Size: 103 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 82 - Forks: 27

LankyCyril/GLOpenAPI

NASA GeneLab Open API

Language: Python - Size: 5.88 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 1

legumeinfo/gcv

Federating genomes with love (and synteny derived from functional annotations)

Language: TypeScript - Size: 13.5 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 30 - Forks: 12

extavourlab/Oskar_Evolution

GitHub Repository associated to the study of the evolutionary history and functional inference of the Oskar protein

Language: Turing - Size: 119 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 3

ladyson1806/NKR_lifespan

GitHub Repository associated to the study of H. glaber and M.musculus shared proteome for understanding their difference in maximum lifespan

Language: Jupyter Notebook - Size: 67.8 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

vaquerizaslab/chess

Comparison of Hi-C Experiments using Structural Similarity.

Language: Python - Size: 241 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 26 - Forks: 7

laelbarlow/amoebae

Workflow for identifying and classifying homologous gene/protein sequences

Language: Python - Size: 7.57 MB - Last synced: 7 months ago - Pushed: 12 months ago - Stars: 16 - Forks: 2

Rowena-h/FusariumLifestyles

Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085

Language: R - Size: 19.4 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 3 - Forks: 3

giffordlabcvr/NCBI-HBV-GLUE

Extension to HBV-GLUE - incorporates all sequences from GenBank.

Size: 118 MB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

giffordlabcvr/NCBI-RABV-GLUE

Extension to RABV-GLUE capturing NCBI data.

Language: JavaScript - Size: 60.2 MB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

vsmicrogenomics/AMRFinderPlus-Matrix

AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.

Language: Python - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

jananiravi/compbio-gists

Computational Biology & Bioinformatics Resources

Language: Shell - Size: 36.1 KB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 11 - Forks: 3

pfenninglab/Zoonomia_Cell-TACIT_fine-mapping

Machine learning models of conserved regulatory elements and human genetics of neuropsychiatric traits

Language: Jupyter Notebook - Size: 1.69 GB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

moshi4/MGCplotter 📦

Microbial Genome Circular plotting tool for comparative genomics using Circos

Language: Python - Size: 68.1 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 33 - Forks: 6

TheJacksonLaboratory/canineglioma

Comparative molecular life history of spontaneous canine and human gliomas. Amin et al. Cancer Cell 2020

Language: HTML - Size: 20.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

giffordlabcvr/RABV-GLUE-WEB

public interactive website layered on top of RABV-GLUE / NCBI-RABV-GLUE projects.

Language: HTML - Size: 1.98 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

KiranJavkar/PRAWNS

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

Language: C++ - Size: 6.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1

moshi4/FastDTLmapper 📦

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

Language: Python - Size: 38.9 MB - Last synced: 5 days ago - Pushed: over 1 year ago - Stars: 12 - Forks: 5

DyogenIBENS/FishComparativeAtlas

FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.

Language: Python - Size: 55.1 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 7 - Forks: 0

medvedevgroup/SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs

Language: C++ - Size: 37.3 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 132 - Forks: 19

medvedevgroup/TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes

Language: C++ - Size: 11.6 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 39 - Forks: 10

giffordlabcvr/Deltaretrovirus-GLUE

A GLUE project for Deltaretroviruses

Language: JavaScript - Size: 9.16 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

reslp/funannotate-docker

Docker container for the funannotate genome annotation pipeline

Language: Roff - Size: 39.1 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 3

seqcode/cross-species-domain-adaptation

Codebase for the domain adaptation (cross-species TF binding prediction) project.

Language: Jupyter Notebook - Size: 37.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago - Stars: 11 - Forks: 6

giffordlabcvr/HEV-GLUE

A GLUE project for Hepatitis E Virus (HEV)

Language: HTML - Size: 13 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

moshi4/plot_genome_align_fig 📦

Plot genome alignment figure using progressiveMauve & genoPlotR

Language: Python - Size: 37 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 16 - Forks: 4

gsneha26/SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

Language: C++ - Size: 103 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 45 - Forks: 12

chadlaing/Panseq

Pan-genomic sequence analysis

Language: HTML - Size: 16.6 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 43 - Forks: 14

ohdongha/OrthNet

CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

Language: Python - Size: 176 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 3

LorenaDerezanin/SOS-FERT_SV_analysis

Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.

Language: Python - Size: 1.65 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

amnh/PCG

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Language: Haskell - Size: 120 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 28 - Forks: 1

moshi4/GBKviz 📦

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Language: Python - Size: 5.25 MB - Last synced: 7 days ago - Pushed: almost 2 years ago - Stars: 19 - Forks: 4

jananiravi/lectures-phylogeny_compgenomics

Supporting material for MMG 801 Lectures 3–5 on 'Phylogeny and Comparative Genomics'

Size: 1.6 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

PerisD/TriMAT

Assemblies, MATA/MATB regions and source data from Peris et al 2022

Language: Python - Size: 8.77 MB - Last synced: 9 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

giffordlabcvr/CRESS-GLUE

A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses

Language: HTML - Size: 32.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

odenas/indexed_ms

Fast matching statistics in small space

Language: C++ - Size: 31.3 MB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1

rbr7/compgenomics2021

Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.

Language: AMPL - Size: 48.8 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

LyonsLab/coge

CoGe (Comparative Genomics) Platform

Language: Perl - Size: 162 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 44 - Forks: 17

labgem/pangenomeNEM

Language: C - Size: 56.6 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

gmagannaDevelop/Genomique-Comparee

Génomique Comparée (Cours M2 AMI2B Paris-Saclay)

Language: Python - Size: 499 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

for-giobbe/BASE

Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.

Language: Shell - Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

giffordlabcvr/BTV-GLUE

A GLUE project for Bluetongue Virus

Language: JavaScript - Size: 42.9 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

univieCUBE/phenotrex Fork of LokiLuciferase/phenotrex

Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn

Language: Python - Size: 28.3 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 8 - Forks: 4

docmanny/smRecSearch

Snakemake Implementation of RecSearch featured in "Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk"

Language: HTML - Size: 60.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

ladyson1806/Oskar_Evolution Fork of extavourlab/Oskar_Evolution

Leo Blondel, Savandara Besse, Cassandra Extavour (2021)

Size: 118 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

giffordlabcvr/COV-GLUE

A GLUE project for SARS-COV2, focused on genetic variation.

Size: 466 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

GAMB-GO/IDOPS

"IDOPS IDentification of Pesticidal Proteins", a profile HMM-based tool to detect pesticidal sequences and compare their genetic context

Language: Python - Size: 1.96 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

alipirani88/Comparative_Genomics

Micro 612 genomics workshop

Language: Shell - Size: 42 MB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 35 - Forks: 32